PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0143.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 449aa    MW: 48935.1 Da    PI: 9.3677
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0143.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09336384348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g W+ I r+      +R+  ++k++w+++l
  Kaladp0019s0143.1.p 336 AWTLSEVMKLVEGVSRYGAGKWSEIKRYSFtsyPHRSSVDLKDKWRNLL 384
                          7***************************999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.443329388IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-13331390IPR009057Homeodomain-like
SuperFamilySSF466892.02E-16331396IPR009057Homeodomain-like
SMARTSM007173.6E-9333386IPR001005SANT/Myb domain
CDDcd116606.13E-20335385No hitNo description
PfamPF002499.5E-7336384IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MLESSSIDDG ADARSEPAPV EPFLQTTAST SSLKTIGSLP AADTSNFPDD VSAHPDFSIL  60
DGHLCLDTLS VRELHQAFRA TFGRQTASKD KLWLKRRIAM ALSNSCQIPT MNFLIKDHKV  120
TLITGLGAHA GVDEVPGGLI NDASSDKHQH QIPQVPEANV STTEPAANPS LDQSLSGDGL  180
QSDHKAAKRV RKPTKRYIEE LSEIESNHVG RRPSPSVKMP GQGQTLHTSH QTSITNVYPH  240
AKVAVTRLDS IGGSGVQVPF VSRIRRCRPR ENIASLLPKC PQENRESPVA DVSRLNQKHG  300
QEMESKSTEG ASGTFDGVPV AVPHLTGEMS RKHHRAWTLS EVMKLVEGVS RYGAGKWSEI  360
KRYSFTSYPH RSSVDLKDKW RNLLRASLAE SSHENRACSR KQTQAPLPAP ILSKVRELAE  420
RQAQTPPPIN NPTKMMGNCE KGPGSGYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029119398.11e-109uncharacterized protein LOC105041815 isoform X6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-86TRF-like 6