PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0019s0109.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 169aa MW: 18474.4 Da PI: 8.4587 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00012 | 4 | 20 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++L +A+eY+ksLq Kaladp0019s0109.1.p 4 DKASMLDEAIEYLKSLQ 20 7***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.28E-6 | 3 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.0E-5 | 3 | 28 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-4 | 4 | 24 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MQSDKASMLD EAIEYLKSLQ LQLQMMWMSS GMQPMMYPAV QHYMSRMGIG MGPTMPSMHN 60 AMQLPRVPLL EQPMSGATTP NQVNVCPTPV LTPLRYQNQL QNSTLAEQYA RYLGFQQMQA 120 ASQPVNMFNF GGAQAFPSNH TIPLPGAGNA PPIAGATMHD SLRGKLTN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024184315.1 | 1e-57 | transcription factor PIF4-like | ||||
Refseq | XP_024184316.1 | 1e-57 | transcription factor PIF4-like | ||||
Refseq | XP_024184317.1 | 1e-57 | transcription factor PIF4-like | ||||
TrEMBL | A0A2P6S0J7 | 3e-56 | A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_010247965.1 | 1e-54 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 7e-14 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0019s0109.1.p |