PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0060.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family BES1
Protein Properties Length: 687aa    MW: 76929.9 Da    PI: 6.0051
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822130.91.4e-40621711110
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 
                          ggs+r+++ +E+E++k+RER+RRai+a+++aGLR++Gny+l++raD+n+V++A +reAGw+v +DGtt+++ s+ +   + a ++ ++ s
  Kaladp0019s0060.1.p  62 GGSRRRRPLEEKERTKLRERHRRAITARLLAGLRRHGNYNLRVRADINDVIAAVAREAGWTVLPDGTTFPARSQAPrPLNGAPNTITTSS 151
                          689*******************************************************************66665523344444444444 PP

               DUF822  90 pesslqsslkssalaspvesy 110
                          p+  +q    +s+l+   +sy
  Kaladp0019s0060.1.p 152 PSVTMQPI-PASSLRGESPSY 171
                          44444422.222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.0E-3763181IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.56E-172242683IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.5E-193245681IPR013781Glycoside hydrolase, catalytic domain
PfamPF013732.2E-103251668IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70282296IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70303321IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70325346IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060329337IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008421.3E-5408417IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.0E-70418440IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70491510IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70525541IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70542553IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.0E-70560583IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.3E-5563573IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.0E-70600622IPR001554Glycoside hydrolase, family 14
PRINTSPR008421.3E-5651665IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008421.3E-5666680IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MVTEMQKMLC LSEDDDEEDD MGVKEEGNEE SRNNAMMMGG GGDGMGNSHF QHHPQEQSSS  60
QGGSRRRRPL EEKERTKLRE RHRRAITARL LAGLRRHGNY NLRVRADIND VIAAVAREAG  120
WTVLPDGTTF PARSQAPRPL NGAPNTITTS SPSVTMQPIP ASSLRGESPS YPNSADYNAC  180
RLKGVYMSSD MPYDLSSNEM SHTSLVGDGC GQTGDLPLID GSMGSIDKQI IEMPTRLQER  240
GFAGTSYIPV YVMLPLGVIN LKCEIVDPDG LVRQLRLLKS ADVDGVMVEC WWGIVEAHAP  300
LDYNWNDYKK LFQIVRELKL KLQVVMSFHE CGGNVGDDVC IPLPHWVVEV GRSNPDIFFT  360
DREGRRNPEC LTWGIDKQRV LKGRTAIEVY FDFMKSFRVE FHQFFEDGCI SMIQVGLGPC  420
GHLRYPSYPI KHGWRYPGAG QFQCYDQYLL KNLATAAEAR GHSFWGRAPD NAGSYNSRPF  480
ETGFFCDGGD YDGYHGRFFL SWYSQVLVDH GDQVLSLAKL AFEGTPIAAK LPGIHWWYKT  540
VSHAAELTAG FHNPSNRDGY APIVAMLKKH GAIVNFTCVE VPVFSEHEEV SEAFADSDGL  600
VWQVMNAAWD AGIPVGSENC LPCYDGEAYN KILDIAKPFN NPDGQHLCTF NYIRLSLHLM  660
EQNNLMEFDR FVKKMHGETT LNHQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-15224667810444BETA-AMYLASE
1byb_A1e-15224667810444BETA-AMYLASE
1byc_A1e-15224667810444BETA-AMYLASE
1byd_A1e-15224667810444BETA-AMYLASE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273843.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLF6I6260.0F6I626_VITVI; Beta-amylase
STRINGVIT_15s0046g02640.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]