PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0028.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 382aa    MW: 42836.4 Da    PI: 6.9915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.7e-14199245455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++N++f+ L + +P +     kK++Ka++L++A++Y+k+L+
  Kaladp0019s0028.1.p 199 DHIMAERNRREKLNQRFNALSSAIPGL-----KKMDKATVLQEATKYVKQLE 245
                          699************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.132195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18199258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-12199245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-17200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-13200249No hitNo description
SMARTSM003536.5E-15201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
METGVHACDH KTVSCSTSIR ENARSVFQYR REDTLEVRVS WPAEMDQHQN LSNLWMVNSQ  60
ADMSGAIPME ASFDDLQHSN SLYAYQLPIV ETAMNDFQIN NNPMEQLTTN IRGSYDVSTT  120
SDSDAADAAI YLYSSVNPTG VVWPKQENHC YNNNRPSQFT NGDYPVWNEN YSWTPGREVK  180
GKATNAIGAT TSRSSEAQDH IMAERNRREK LNQRFNALSS AIPGLKKMDK ATVLQEATKY  240
VKQLEERIKT LEKQTKSITM MESAVFVKKS LRVINDIHKP GFSNETSFSE KKLSDESLPV  300
IEVRFCEKKV LIRVHCDRKK GAAEKILGEI AKLHLTVVNS NVLAFGSSAL DVTVLAKMNP  360
ECSMAENELV KTLCVALKSF M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-51bHLH family protein