PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0018s0301.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 416aa MW: 43775.5 Da PI: 8.9686 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.7e-12 | 41 | 65 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.3.p 41 QPVCKYYMMTGTCKFGSSCKYHHPR 65 689********************96 PP | |||||||
2 | zf-CCCH | 36.8 | 6.7e-12 | 84 | 109 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.3.p 84 GEKECSYYVKTGQCKYGVTCKFHHPQ 109 7899********************97 PP | |||||||
3 | zf-CCCH | 40.2 | 5.6e-13 | 250 | 276 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.3.p 250 PGQPECQYYMKTGDCKYGSSCRYHHPP 276 5789*********************97 PP | |||||||
4 | zf-CCCH | 34 | 5.1e-11 | 296 | 319 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.3.p 296 APPCIFFAQYGVCKYGSACKYDHS 319 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.126 | 38 | 66 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 38 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.05E-6 | 39 | 66 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-10 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 43 | 65 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-9 | 84 | 109 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 88 | 108 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.389 | 249 | 277 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 249 | 276 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-10 | 251 | 276 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 253 | 277 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-6 | 255 | 277 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 293 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 293 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 296 | 320 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-4 | 298 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MMKCLTEFVG AANVRIMLSD CSQVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK 60 YHHPRHGGGP HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP 120 ALGISPGPAP RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG 180 MVPVPGWGHF PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS 240 QKDRGLPERP GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI 300 FFAQYGVCKY GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL 360 HQEIAAVSRK DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634959.1 | 1e-139 | zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-109 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A2P6QY68 | 1e-136 | A0A2P6QY68_ROSCH; Putative transcription factor C3H family | ||||
STRING | VIT_05s0020g01650.t01 | 1e-135 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-101 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0018s0301.3.p |
Publications ? help Back to Top | |||
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