PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0301.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 394aa MW: 41376.6 Da PI: 9.1182

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0301.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.7	1.6e-12	19	43	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.2.p 19 QPVCKYYMMTGTCKFGSSCKYHHPR 43 689********************96 PP
2	zf-CCCH	36.9	6.2e-12	62	87	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.2.p 62 GEKECSYYVKTGQCKYGVTCKFHHPQ 87 7899********************97 PP
3	zf-CCCH	40.3	5.2e-13	228	254	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.2.p 228 PGQPECQYYMKTGDCKYGSSCRYHHPP 254 5789*********************97 PP
4	zf-CCCH	34	4.8e-11	274	297	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.2.p 274 APPCIFFAQYGVCKYGSACKYDHS 297 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.4E-7	16	43	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.126	16	44	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.68E-7	17	44	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.7E-10	19	43	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	21	43	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-5	60	87	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	60	88	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-9	62	87	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	62	88	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	66	86	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.389	227	255	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-7	227	254	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.4E-10	229	254	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	231	255	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-6	233	255	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	271	298	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.737	271	299	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	274	298	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-8	274	297	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	276	297	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MVVGALRLGG GEYPQRVGQP VCKYYMMTGT CKFGSSCKYH HPRHGGGPHV SLNYLGYPLR 60 PGEKECSYYV KTGQCKYGVT CKFHHPQPTN IPVTTASPAL GISPGPAPRL YPQVQPSSIS 120 GAQPYGVMPG NWQVARPPAM LPGPYIQGPY APMFVPHGMV PVPGWGHFPA HVSPASPTPQ 180 PAIGSSPLYG ITQLSSSAPE YTGPYSTVSL SVGASSSSQK DRGLPERPGQ PECQYYMKTG 240 DCKYGSSCRY HHPPELIRPK TTPEPVNLPI RPGAPPCIFF AQYGVCKYGS ACKYDHSSRT 300 GSLSYSPSAS SLTDVPVAPL PVGSSTGTLA ASSSSSDLHQ EIAAVSRKDS SPTPQISSSA 360 TPTSTSLSSP PPKSQPTPHS TGSTSSKEAH SSS*

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MVVGALRLGG GEYPQRVGQP VCKYYMMTGT CKFGSSCKYH HPRHGGGPHV SLNYLGYPLR  60
PGEKECSYYV KTGQCKYGVT CKFHHPQPTN IPVTTASPAL GISPGPAPRL YPQVQPSSIS  120
GAQPYGVMPG NWQVARPPAM LPGPYIQGPY APMFVPHGMV PVPGWGHFPA HVSPASPTPQ  180
PAIGSSPLYG ITQLSSSAPE YTGPYSTVSL SVGASSSSQK DRGLPERPGQ PECQYYMKTG  240
DCKYGSSCRY HHPPELIRPK TTPEPVNLPI RPGAPPCIFF AQYGVCKYGS ACKYDHSSRT  300
GSLSYSPSAS SLTDVPVAPL PVGSSTGTLA ASSSSSDLHQ EIAAVSRKDS SPTPQISSSA  360
TPTSTSLSSP PPKSQPTPHS TGSTSSKEAH SSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634959.1	1e-139	zinc finger CCCH domain-containing protein 34-like
Swissprot	Q6NPN3	1e-110	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A2P6QY68	1e-136	A0A2P6QY68_ROSCH; Putative transcription factor C3H family
STRING	VIT_05s0020g01650.t01	1e-135	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-101	C3H family protein

Link Out ? help Back to Top
Phytozome	Kaladp0018s0301.2.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]