PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0018s0301.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 466aa MW: 49182 Da PI: 8.6204 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39 | 1.3e-12 | 45 | 69 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG+C yG+rC+F+H+p Kaladp0018s0301.1.p 45 EANCKYYLRTGFCGYGARCRFNHPP 69 689********************97 PP | |||||||
2 | zf-CCCH | 38.4 | 2e-12 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.1.p 91 QPVCKYYMMTGTCKFGSSCKYHHPR 115 689********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.7e-12 | 134 | 159 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.1.p 134 GEKECSYYVKTGQCKYGVTCKFHHPQ 159 7899********************97 PP | |||||||
4 | zf-CCCH | 40 | 6.4e-13 | 300 | 326 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.1.p 300 PGQPECQYYMKTGDCKYGSSCRYHHPP 326 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.8 | 5.9e-11 | 346 | 369 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.1.p 346 APPCIFFAQYGVCKYGSACKYDHS 369 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.075 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-10 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-6 | 48 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-7 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.126 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-6 | 89 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-10 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 93 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 134 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-4 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.389 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-7 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 303 | 327 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-6 | 305 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 343 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 346 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 348 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MEGYGQSNPG AGGSQSDPGG EGYAEESTWQ VGLGGQELYP ERPNEANCKY YLRTGFCGYG 60 ARCRFNHPPD RTMVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK YHHPRHGGGP 120 HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP ALGISPGPAP 180 RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG MVPVPGWGHF 240 PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS QKDRGLPERP 300 GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI FFAQYGVCKY 360 GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL HQEIAAVSRK 420 DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634959.1 | 1e-171 | zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q6NPN3 | 1e-133 | C3H58_ARATH; Zinc finger CCCH domain-containing protein 58 | ||||
TrEMBL | A0A2P6QY68 | 1e-168 | A0A2P6QY68_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_010241841.1 | 1e-165 | (Nelumbo nucifera) | ||||
STRING | XP_004296815.1 | 1e-165 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-124 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0018s0301.1.p |
Publications ? help Back to Top | |||
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