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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Kaladp0018s0269.5.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 660aa MW: 72244.3 Da PI: 6.7987 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 82.6 | 4.2e-26 | 217 | 274 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL....QkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHL QkYRl
Kaladp0018s0269.5.p 217 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLqpwlQKYRL 274
79*******************.***************************7333368997 PP
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| 2 | Response_reg | 75.2 | 2.4e-25 | 38 | 146 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl+vdD+p+ + +l+++le+ y ev+ + +e a+ ll+e++ +D+++ D+ mp+mdG++ll+ e +lp+i+++a ++++ + +
Kaladp0018s0269.5.p 38 VLVVDDDPTCLAILERMLERCLY-EVTKCNRAEIAVSLLQENRngYDVVISDVHMPDMDGFKLLEYVGLEM-DLPVIMMSADDTKAVVMK 125
89*********************.*****************999***********************6644.8***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +++l +
Kaladp0018s0269.5.p 126 GVTHGACDYLIKPVRMDALKN 146
****************99976 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.2E-166 | 11 | 648 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 3.84E-35 | 35 | 164 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 3.5E-42 | 35 | 175 | No hit | No description |
| SMART | SM00448 | 7.0E-30 | 36 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 41.831 | 37 | 152 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 4.9E-23 | 38 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 3.09E-27 | 39 | 151 | No hit | No description |
| PROSITE profile | PS51294 | 9.671 | 214 | 273 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 3.23E-17 | 214 | 277 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 216 | 279 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.7E-22 | 217 | 268 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.2E-6 | 219 | 268 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 660 aa Download sequence Send to blast |
MNLSSGGNRS MSTVASSCGG NRRPVDAVSD RFPAGLRVLV VDDDPTCLAI LERMLERCLY 60 EVTKCNRAEI AVSLLQENRN GYDVVISDVH MPDMDGFKLL EYVGLEMDLP VIMMSADDTK 120 AVVMKGVTHG ACDYLIKPVR MDALKNIWQH VVRKKKHEWK ELEQSKSREE VENRQAKQAE 180 EADYSSSANE GSWRNSKKRK DEEEDLEDRE DTSTLKKPRV VWSVELHQQF VAAVNQLGID 240 KAVPKKILEL MNVPGLTREN VASHLQPWLQ KYRLYLRRIS GGVPQHPGVI NNGFMGSQEG 300 PFGAMSSLTG LDLQAIAASG HLPGQSLATL QSAVFNKGNT LSGMTMAGMD QRNIFSFENP 360 KIRFGEGQQL QQMTNGKQIN LLHGIPTNVE SKQLTSLHHS ESSIGSVSTQ PNSHGNSSGS 420 LMMQATHPQS RAQLLNEAVS SQFSKAPPSI GLLNVSNGAG VGAVQMRNNN PVHDNRGTGF 480 NLVSQPSPIP SFPINKSELA GSGFPLASAP GVMAAKGMLH DEINSRMKGS VGYTPNYDMF 540 SEIHQPKFHP WELQGVGLQF DCSHRPNTLQ GSAPAVYSSG ERTQYYRTQN TSQQIPGHNS 600 VKIKGERIGD FDSQNNLIPQ HYGQEDLMSA LLKQHPGSDG AADGEFDFDG YPSIGNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 1e-20 | 216 | 280 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
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| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002519174.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
| Swissprot | Q940D0 | 1e-180 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | B9RZK5 | 0.0 | B9RZK5_RICCO; Two-component response regulator | ||||
| STRING | XP_002519174.1 | 0.0 | (Ricinus communis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.1 | 1e-165 | response regulator 1 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Kaladp0018s0269.5.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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