PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0069.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 318aa    MW: 34509.8 Da    PI: 6.5129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1168114555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er RR+++   f  L  l+P++     +K +Ka+i+e Av Y++ L+
  Kaladp0018s0069.1.p  68 HIQTERERRRKMSGMFGALHALIPHL----PPKTDKATIVESAVSYVRTLE 114
                          8899*********************6....39***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.87263113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1465130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1368127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-1168118No hitNo description
PfamPF000104.4E-968114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-869119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDEKPQGEN NDVSFSCGSL SLWGAGGEEA EKGDGSAKRE ELGKGVAGGG EKGEEEGTAA  60
AEEQVELHIQ TERERRRKMS GMFGALHALI PHLPPKTDKA TIVESAVSYV RTLEERLQIL  120
QHRKQEKLEQ AKNGVGFNPF PPSPSSMIPP QPHPPPYEPM ALLADHHLHS SSSSRSITPP  180
NSNPTTPTTH NAPGSPIMML NPNRNSSSPR ETPVKLTLSS SSIMFRTFTS KNVVLCVCGE  240
EASFNICGAR RPGFYTGIAS VLDKYRLEVK SCHISSDTQS NRATLMIQAQ ATALLDQYPA  300
EEIYKRAAVE MVQVVSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-19bHLH family protein