PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0327.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 303aa    MW: 32933.4 Da    PI: 6.6339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0327.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-11123168555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++ErrRR+++ ++f  L  ++P +     kK +Ka++L  +++Y+++++
  Kaladp0016s0327.1.p 123 HIMAERRRREKLSQRFIALSAIVPGL-----KKTDKASVLGDTIKYLRQME 168
                          999***********************.....9****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.519118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-12123172No hitNo description
Gene3DG3DSA:4.10.280.105.0E-16123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-15123189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-9123168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDVPNFNSLS YQAGSRHVNQ WVSLSSLDHG RFMDADGGLQ VQAGSWNSGM QNSNSSTGSN  60
VSFVGMGYGN GLQMPKEEVS SWEDASPFAS PESMSVPMPV PRSPLGVVKT QPVSRAGGDA  120
QGHIMAERRR REKLSQRFIA LSAIVPGLKK TDKASVLGDT IKYLRQMEER VKSLEEEAKQ  180
KTVHSMVLQV KKPQLLPSRD EAPSSEPETD SFHTSFNDAL PEIEARICDK SVLIRIVCEK  240
RQGGVVEQVL AEVEKLHLTI INSSVLSFGA SSLNIIIVAQ VIGGSLEREY VKSCDLVIIH  300
GV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-13122180866Transcription factor MYC2
5gnj_B9e-13122180866Transcription factor MYC2
5gnj_E9e-13122180866Transcription factor MYC2
5gnj_F9e-13122180866Transcription factor MYC2
5gnj_G9e-13122180866Transcription factor MYC2
5gnj_I9e-13122180866Transcription factor MYC2
5gnj_M9e-13122180866Transcription factor MYC2
5gnj_N9e-13122180866Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131ERRRRE
2127132RRRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486799.12e-63transcription factor bHLH25-like
RefseqXP_015388301.12e-63transcription factor bHLH25-like
SwissprotQ9T0727e-50BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H5QA055e-62A0A2H5QA05_CITUN; Uncharacterized protein
STRINGXP_006486799.17e-63(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-52bHLH family protein