PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0016s0311.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 271aa MW: 28866.1 Da PI: 4.955

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0016s0311.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+Fs+ L H+r H Kaladp0016s0311.1.p 143 HECGICGKVFSTGQALGGHMRAH 165 78*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.65E-6	140	167	No hit	No description
Pfam	PF13912	1.8E-11	142	166	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.9E-4	143	165	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.554	143	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	145	165	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEGRNASRGS PSNVSEDHKR DGEDSSDRRG NNQERSSSDS SRHGGERRLN VDEIVITMIT 60 LVAIATSGNV VVHDQSWMTA AIVQSESFIP PPPPPAPAPA PAPTRVINNN ANNDAIPPPE 120 EGCSSGQSPP NKKRKRAEHQ EVHECGICGK VFSTGQALGG HMRAHYPGHL SRTRHANSNV 180 AIASSAASVA APSSYSGATI NNNNNNNINS EVDAEVNDES TVVEHNAANE SDRAASHPRL 240 DIDLNVKPAE MSEEPEEENL EEEGHHSYGD *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-08	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0016s0311.1.p