PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 429aa MW: 47134.6 Da PI: 5.0174 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.9 | 5e-10 | 240 | 287 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Kaladp0016s0270.1.p 240 SHSLAERVRREKISERMKYLQELVPGC----NKITGKAGMLDEIINYVQSLQ 287 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.33E-10 | 234 | 291 | No hit | No description |
SuperFamily | SSF47459 | 7.72E-17 | 234 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-17 | 236 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.593 | 236 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-7 | 240 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-9 | 242 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MNRGLPEMML HCLNTSVGVS GGAELTVLER QRAHMKWQQQ QQGLEYGNVY SVLAVGDGGV 60 ENQFQGQLCG ESGVGQVGHP MVKPETELDG AWTGFGNCGM PSAEDFMSCG YADDAAAEYS 120 YQMAKTASCP APPPILGETS EGKDSILSGR TSLGGAKKRK AEKATSLKAV TDKDTNEKKI 180 QEWAEDGESK ITQQNRSTIS KNKKKGEASA DTSKDNSKVS EVPRTDYIHV RARRGQATDS 240 HSLAERVRRE KISERMKYLQ ELVPGCNKIT GKAGMLDEII NYVQSLQRQV EFLSMKLATV 300 NPQLNFNIES LFGKEVFAPC TSSYPTLGAL SEMANQAYTQ FNQLEVVSPG LELRNYQPDM 360 GLQRQLSETY VDTTSFNQNP STWDAELQNL MAMEFQGRST SYPSQPFIGY TEANDPKDGD 420 LNQNIHID* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007199864.1 | 1e-126 | transcription factor bHLH63 isoform X1 | ||||
Swissprot | Q8GY61 | 4e-61 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A3Q8WNJ6 | 1e-126 | A0A3Q8WNJ6_BETPL; BHLH transcription factor 8 | ||||
STRING | EMJ01063 | 1e-125 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 2e-63 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0016s0270.1.p |