PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0016s0207.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 420aa MW: 46260.6 Da PI: 8.4859

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0016s0207.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.3	1.8e-29	117	167	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Kaladp0016s0207.1.p 117 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 167 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.257	104	187	IPR003035	RWP-RK domain
Pfam	PF02042	3.5E-25	119	167	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.97E-23	318	407	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.9E-22	319	402	No hit	No description
PROSITE profile	PS51745	20.699	321	404	IPR000270	PB1 domain
SMART	SM00666	2.7E-24	321	404	IPR000270	PB1 domain
Pfam	PF00564	3.4E-16	322	403	IPR000270	PB1 domain
CDD	cd06407	3.75E-42	322	402	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MSLMPSYHRS SDNESPAKRS RRDQSSWVAE MADAQSQKPG KSVAISLERR SEQAEDKFEM 60 ATFWENVKEE PPQDFEIIRD DYRFKSFNDT GEDSSSLGEC WPGGSVKATD RRRTKSEKTI 120 SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVSHS LKKLQLVIDS 180 VQGADGSIQI SSFYSNFPEL SSPNFSGATQ SSKVINQVQS TEPDGSDLRN AKTKAGLVSS 240 GDATSSSPSS SSSQNSESSL SFSTGAQHRP NSTLQRVCSD VGLRSPSQDA PPPKLLERSQ 300 SHKLFTDHSI LPPLPKRRGG AFRVKASFGE EKVRFGLHPH WALEDLQQEI ARRFGVDDLG 360 HIQIKYLDDD SEWVLLTCTA DLEECIDVHL SSQSHTIKLS VNKAPHPHLG SSLGSTGCP*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MSLMPSYHRS SDNESPAKRS RRDQSSWVAE MADAQSQKPG KSVAISLERR SEQAEDKFEM  60
ATFWENVKEE PPQDFEIIRD DYRFKSFNDT GEDSSSLGEC WPGGSVKATD RRRTKSEKTI  120
SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVSHS LKKLQLVIDS  180
VQGADGSIQI SSFYSNFPEL SSPNFSGATQ SSKVINQVQS TEPDGSDLRN AKTKAGLVSS  240
GDATSSSPSS SSSQNSESSL SFSTGAQHRP NSTLQRVCSD VGLRSPSQDA PPPKLLERSQ  300
SHKLFTDHSI LPPLPKRRGG AFRVKASFGE EKVRFGLHPH WALEDLQQEI ARRFGVDDLG  360
HIQIKYLDDD SEWVLLTCTA DLEECIDVHL SSQSHTIKLS VNKAPHPHLG SSLGSTGCP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422434.1	1e-121	protein NLP2
Refseq	XP_024035066.1	1e-121	protein NLP2
Swissprot	Q7X9B9	1e-103	NLP2_ARATH; Protein NLP2
TrEMBL	A0A173G8J6	1e-122	A0A173G8J6_PONTR; Transcription factor NLP2
STRING	XP_006422434.1	1e-120	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-102	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0016s0207.1.p