PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 288aa MW: 29389.8 Da PI: 7.5885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.5 | 6.4e-40 | 34 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+k+l+++p +r da+ +++yeA+ar+r+PvyG+v++i++lqqq+ + Kaladp0016s0160.1.p 34 PCGACKFLRRKCVEGCIFAPYFDSEQgSAHFAAVHKVFGASNVSKMLQHVPLPKRLDAVVTICYEAQARLRNPVYGCVAHIFALQQQVVN 123 7***********************9989************************************************************** PP DUF260 90 lkaelallkee 100 l+ e+++l+++ Kaladp0016s0160.1.p 124 LQGEISYLQAH 134 ******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.093 | 33 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.3E-39 | 34 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MSSNPTIGCA PGGSSSGGGG GGGAGGGGGG GGGPCGACKF LRRKCVEGCI FAPYFDSEQG 60 SAHFAAVHKV FGASNVSKML QHVPLPKRLD AVVTICYEAQ ARLRNPVYGC VAHIFALQQQ 120 VVNLQGEISY LQAHLANLEL QTPPVQPPAP PPHNPLPHFS ISDLPTASAM PPTFDVSSLL 180 FDPVTQWPQL QPMHPQHHQQ ASDLNNPNTR DQYVTLAIPH PSSDGAQNLA PGGAAGTSGS 240 GGGDAQGLAR ELLLRHGSSY RASGASSSGA VHGSCSEAQR PSGGQPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 30 | 135 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 30 | 135 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00314 | DAP | Transfer from AT2G45420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083561.1 | 8e-81 | LOB domain-containing protein 18 | ||||
Swissprot | O22131 | 1e-64 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
Swissprot | O81323 | 8e-65 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A067KAC7 | 2e-79 | A0A067KAC7_JATCU; Uncharacterized protein | ||||
STRING | VIT_15s0048g00830.t01 | 7e-79 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 4e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0016s0160.1.p |