PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0016s0082.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 256aa MW: 29296.4 Da PI: 6.2872 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.4 | 9.3e-22 | 86 | 146 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Kaladp0016s0082.2.p 86 RQRWTPTPQQLQRLEQLFDQgNGTPSKQKIKEITDELtkhgQISETNVYNWFQNRRARSKR 146 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 96.6 | 2.1e-31 | 85 | 148 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp+Q++ Le+l+++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq Kaladp0016s0082.2.p 85 ARQRWTPTPQQLQRLEQLFDQGNGTPSKQKIKEITDELTKHGQISETNVYNWFQNRRARSKRKQ 148 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-17 | 81 | 151 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.532 | 82 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.9E-13 | 84 | 151 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.81E-18 | 85 | 150 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-19 | 86 | 146 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-13 | 86 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEWEKKQTQL AEQNNQAGGG DMYMKVMTDE QMELLRHQIS AYTAISQRLV DMHKTISAQQ 60 DLAGIRLGSL YCDPLMTSAG HKITARQRWT PTPQQLQRLE QLFDQGNGTP SKQKIKEITD 120 ELTKHGQISE TNVYNWFQNR RARSKRKQSV SATHNGDSEV ETEVESPRDK KTKPENIQSF 180 ETSSARLANI YFQNSDVGHD MFHSENGLRS SNDLDHFAVY DNELTNPRFD QFISKIEVPG 240 NFSHFGHDGD YDMIH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 147 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023893569.1 | 1e-109 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 4e-83 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A438ETD4 | 1e-107 | A0A438ETD4_VITVI; WUSCHEL-related homeobox 8 | ||||
TrEMBL | D7UDB5 | 1e-107 | D7UDB5_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0122g01140.t01 | 1e-108 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-73 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0016s0082.2.p |
Publications ? help Back to Top | |||
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