PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 288aa    MW: 32769.9 Da    PI: 7.8321
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.6e-161764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd ll +++ ++G g W+ ++ + g++R++k+c++rw++yl
  Kaladp0016s0001.1.p 17 KGAWSEEEDALLRECIGKYGEGKWHQVPLKAGLNRCRKSCRLRWLNYL 64
                         79********************************************97 PP
2Myb_DNA-binding47.73.6e-1570116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg ++ +E +l+++++k+lG+ +W++Ia +++ gRt++++k++w+++l
  Kaladp0016s0001.1.p  70 RGEFSMDEADLIIRLHKLLGNSRWSLIAGRLP-GRTANDVKNYWNTHL 116
                          899*****************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1551268IPR017930Myb domain
SuperFamilySSF466893.52E-2714112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-211567IPR009057Homeodomain-like
SMARTSM007171.8E-141666IPR001005SANT/Myb domain
PfamPF002496.8E-151764IPR001005SANT/Myb domain
CDDcd001673.98E-101964No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2268119IPR009057Homeodomain-like
PROSITE profilePS5129417.19669120IPR017930Myb domain
SMARTSM007171.0E-1269118IPR001005SANT/Myb domain
PfamPF002497.1E-1470116IPR001005SANT/Myb domain
CDDcd001671.60E-1072116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MRRMAADHGH RLYGVRKGAW SEEEDALLRE CIGKYGEGKW HQVPLKAGLN RCRKSCRLRW  60
LNYLKPNIKR GEFSMDEADL IIRLHKLLGN SRWSLIAGRL PGRTANDVKN YWNTHLGKKT  120
MLRLQALMNS AAAADYQTKV IKPRPRTFSK TLVQCMRSGQ QQQQGQHFCT NNGSKSSTIK  180
DDAVDLISGK DDDGVDKQIQ WWKSLLDDQL SDQELAALAS GSCGLVEEEQ AGYELPQPPV  240
DDRSGYKIYE ERPKTDFTNE LSFDIELWDF FTDDDQWQTS SGLIQGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-20171207108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256541.18e-74PREDICTED: transcription factor MYB113-like
SwissprotQ9FNV96e-63MY113_ARATH; Transcription factor MYB113
TrEMBLA0A3G8FWW79e-74A0A3G8FWW7_9SOLA; MYB transcription factor AN2
STRINGXP_010062250.12e-72(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-64myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]