PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0015s0148.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 28365.5 Da PI: 9.845 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 12 | 62 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + +r r +lg+++t+eeAa+a+++a+++l+ge Kaladp0015s0148.1.p 12 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 62 589******.7*********42...35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.9E-28 | 12 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.28E-31 | 12 | 71 | No hit | No description |
Pfam | PF00847 | 2.8E-15 | 12 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-34 | 12 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-20 | 13 | 71 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-7 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MAMGKAAVVG RRFVGVRQRP SGRWVAEIKD SCQRVRLWLG TYDTPEEAAR AYDEAARALR 60 GENARTNYPY SKRPCGSSVN SFGNGDGNHE LSCSSLKAKL SKSLQSVMGR SSESSKSSKN 120 RVSDPLTFAS VFHLRGNGGP QQYRNDTIDK AVQPSIVVPS HEVNQSSSWD SSSLSDSSPD 180 RVTIHSDTSG SDLTEKFFNI ERLTCPNQTM NWGSMLLDNW QGEFTGNTES SRRKKFKVSS 240 SVMVPPTFSS FPFNDVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 12 | 71 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021622987.1 | 2e-75 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2G9HFD5 | 4e-76 | A0A2G9HFD5_9LAMI; Uncharacterized protein | ||||
STRING | XP_008391661.1 | 9e-71 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-10 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0015s0148.1.p |