PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0124.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 631aa    MW: 70501.4 Da    PI: 4.8655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000374554861754
                          HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          N++f++Lr+++P+a   +    +Ka++Le+++  +++L
  Kaladp0015s0124.1.p 455 NERFSTLRSMIPSA---G---ADKASVLEETIMQVQKL 486
                          99***********9...4...78899999998766666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-5018204IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00123451490No hitNo description
Gene3DG3DSA:4.10.280.102.9E-5455500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MDKDQEEMED VRLAPGNLRQ LLGVTVRSVQ WSYAIFWSMS RTKQGVLEWG DGYYNGDIKT  60
RKISQAMDVV KADKMGLERS KLLRELYELL LEGENCEEEQ QAARPSNADL CPEDLSDAEW  120
YYMVCMSFEF NLGQGLPGRA LANGQTIWLR NAQYADGKLF TRSLLAKSAS VQTVLCFPYL  180
GGVMELGTTE LVLEDPALIQ RVKTSLLEFS KPGCNVNWTF GPYSTDSDED PVCVDAKMNT  240
LQNVQLGAEN IKAEDEEMRL DGHSEDSDEE LGAGLPDCSS DTSGGNHQSH VYSWHLTDGY  300
FGADFLGFTN SSDCASQVVE SPADTKISEP RFGSPNAQNC LQENKCIKPD AHDNGSSDDL  360
HYRKVISTIL RKSNQLTGSL GCSASGYACR SGFRAWKNRG AVTSRRLLDR QRILKKTLFT  420
IPLMYSKGFI KPETEQIGKK ACDKPNDDVS RILENERFST LRSMIPSAGA DKASVLEETI  480
MQVQKLEARL GELESSVGNA REDPKWEPSR VPRDDTAEQV SDNSESERKI LKQKRKVYEC  540
ETASEVNSSL KVVIMEQEVS IEVTCRCREY LLLDIMDAVN RLKLDAHWVH SATHEGLFTL  600
KLKSKFRGTG VVPSGRVVKQ VIWESICEEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-18182109195Transcription factor MYC3
4rqw_B2e-18182109195Transcription factor MYC3
4rru_A3e-181820248227Transcription factor MYC3
4rs9_A2e-18182109195Transcription factor MYC3
4ywc_A3e-181820248227Transcription factor MYC3
4ywc_B3e-181820248227Transcription factor MYC3
4yz6_A2e-18182109195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969803.11e-174PREDICTED: transcription factor EGL1
TrEMBLF6I6291e-170F6I629_VITVI; Uncharacterized protein
STRINGVIT_15s0046g02560.t011e-171(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-115bHLH family protein