PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0107.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 430aa    MW: 46765 Da    PI: 8.1541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-125176227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         + + C++++rtG+C +G rC+F+H++
  Kaladp0015s0107.1.p 51 GVADCDHYMRTGYCGFGIRCRFNHPQ 76
                         7899********************97 PP
2zf-CCCH37.63.6e-1296122127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++ C+f+++tGtCk+G +CkF+H++
  Kaladp0015s0107.1.p  96 PGEPVCQFYMKTGTCKFGRSCKFHHPK 122
                          5789*********************96 PP
3zf-CCCH37.93e-12144168327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          + +C+++++tG+Ck+G +CkF+H++
  Kaladp0015s0107.1.p 144 EIECSYYLKTGQCKFGVTCKFHHPQ 168
                          568********************97 PP
4zf-CCCH37.92.9e-12277303127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG CkyG +Ck++H++
  Kaladp0015s0107.1.p 277 PGEPECQYYLRTGDCKYGLSCKYHHPK 303
                          5799*********************96 PP
5zf-CCCH42.21.3e-13323349127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++te+Crf+ +tG+Ck+G++CkF H++
  Kaladp0015s0107.1.p 323 PGTEPCRFYIQTGYCKFGSTCKFDHPM 349
                          68***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.2E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4974977IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-105176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.12E-65379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-55576IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77995123IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-997122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-699123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5100121IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446141169IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10144168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5145169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.746276304IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-6276303IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5281303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4282302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-7322351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746322350IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7322349IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10323349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-7325348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDMYGRGQER IGSESDRNPV EWDPAGGVTG LEESMMRMGL RGAETYPERP GVADCDHYMR  60
TGYCGFGIRC RFNHPQDRSK VVVAMRYGGG EYPERPGEPV CQFYMKTGTC KFGRSCKFHH  120
PKNGSGSVSQ VPLNIFGYPL RPGEIECSYY LKTGQCKFGV TCKFHHPQPA GMPMPPTSAP  180
TFYPAVQSSP EQFGESSTQW KVDRTLLPGS YVQGSYGPML IPPGVVPVPS WAPYSGSVGS  240
VPSTAAESAA VPYPPPMLPP YAGTPSGQVV QAFPERPGEP ECQYYLRTGD CKYGLSCKYH  300
HPKQWNIPSA NYALSPLGLP LRPGTEPCRF YIQTGYCKFG STCKFDHPMD TMGYNLVPPS  360
PSNIPVPQHP IQTTPLLPPP FSTTSDLIPS SNEPPYPGIT TSSSSGALLP HISSKATRQG  420
GEPVRRNSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652064.11e-170PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-155C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLD7TP301e-169D7TP30_VITVI; Uncharacterized protein
STRINGVIT_07s0104g01460.t011e-170(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-148C3H family protein