PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0015s0104.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 975aa MW: 108027 Da PI: 6.9188

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0015s0104.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2e-06	71	126	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ + ++++F + ++s++e +e+++k g+t +qV+ +F +R++ + Kaladp0015s0104.1.p 71 KKPRDLLNPKAVAYMQSVFSIKDKISKKETREISAKFGITLAQVRDFFACQRTRVR 126 79999********************************************9999977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.167	68	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-5	70	129	IPR009057	Homeodomain-like
SMART	SM00389	0.0034	70	132	IPR001356	Homeobox domain
CDD	cd00086	0.00151	71	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-5	71	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence Send to blast
MDGLSARLAA EEEGIGTSME SFQKSLESQK DLFHSQLVEM QRIVSTQCEF TGVNPLSQEM 60 AAGALSIPIG KKPRDLLNPK AVAYMQSVFS IKDKISKKET REISAKFGIT LAQVRDFFAC 120 QRTRVREIVQ STQEMSRDRR KVLKELQDGN QENEDSIMLS DLSPVVNTGP VTCDTNMSNA 180 VDPEINGTTL QSDSRPTETD VVTARADSPE FSLATCIPIT DEEDIPEPSR TETAPHETAG 240 PTYAEPVPLN VFPPTRSESL VLNSAGISDA GMQPKYIPVE VIPGLDGSEK NFIENIFNLM 300 STEETFSGKV KLMEGILKVE NPSVLNWFLT RGGMMILATW LGQAAVEEQT SVLYVILKVL 360 CHLPLAKAST EQMSVILQSV NSLRFYRTQD ISNKARICLA RWSKLFAKNQ PMRKRDGVKS 420 QVEVAKHKLL TQSINEIIGD ESRQSELENT DGNLTSSNKA IENLRKRDRP LQMEMLTASS 480 DESMKRSSMG LPASQGRGRR KVQLVEHPGQ KLTGRSQQAA RASVSQSRPV STDDIKKAKL 540 RKEFMEAKYG KKKSEHENLK LGMNQSGAIV SASRVPTQPV PHERRNSRLP LPKTVTEHEP 600 PVVLHPYRTD EKKKDLLPLQ SADELKQPLV PLQNSTVEFE PTALHLSGNT DEQPMMPMAK 660 SIAEQMQSMV PILNKYIQTE VSPKNGAKQA QPMVSISSDS APPQFNSNGT AEQRQPVVPI 720 ANSMVQQAPR QKKTIPESKE PFWKQCKRVQ VQWKTPPEMV IDKEWRVGSG QNSREVCDQK 780 LRNKREKEFV YQRPEEIPPN PKNPWENEID YDDSLTPIIP IEPVLDTTDT LQSHNSISLE 840 TGNASQMVSV APTPAPNSLP ATISGSAHDP VLLDALLKNP ALVFTLTSGQ PNSMPSEDTV 900 RLLDMIKANA GALPAANITP NLPSPTPSSN FGTVRDLGLC SMTCKLNNYV YIVSSHDIFT 960 SLVHHSRLFL PVYF*

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence Send to blast

MDGLSARLAA EEEGIGTSME SFQKSLESQK DLFHSQLVEM QRIVSTQCEF TGVNPLSQEM  60
AAGALSIPIG KKPRDLLNPK AVAYMQSVFS IKDKISKKET REISAKFGIT LAQVRDFFAC  120
QRTRVREIVQ STQEMSRDRR KVLKELQDGN QENEDSIMLS DLSPVVNTGP VTCDTNMSNA  180
VDPEINGTTL QSDSRPTETD VVTARADSPE FSLATCIPIT DEEDIPEPSR TETAPHETAG  240
PTYAEPVPLN VFPPTRSESL VLNSAGISDA GMQPKYIPVE VIPGLDGSEK NFIENIFNLM  300
STEETFSGKV KLMEGILKVE NPSVLNWFLT RGGMMILATW LGQAAVEEQT SVLYVILKVL  360
CHLPLAKAST EQMSVILQSV NSLRFYRTQD ISNKARICLA RWSKLFAKNQ PMRKRDGVKS  420
QVEVAKHKLL TQSINEIIGD ESRQSELENT DGNLTSSNKA IENLRKRDRP LQMEMLTASS  480
DESMKRSSMG LPASQGRGRR KVQLVEHPGQ KLTGRSQQAA RASVSQSRPV STDDIKKAKL  540
RKEFMEAKYG KKKSEHENLK LGMNQSGAIV SASRVPTQPV PHERRNSRLP LPKTVTEHEP  600
PVVLHPYRTD EKKKDLLPLQ SADELKQPLV PLQNSTVEFE PTALHLSGNT DEQPMMPMAK  660
SIAEQMQSMV PILNKYIQTE VSPKNGAKQA QPMVSISSDS APPQFNSNGT AEQRQPVVPI  720
ANSMVQQAPR QKKTIPESKE PFWKQCKRVQ VQWKTPPEMV IDKEWRVGSG QNSREVCDQK  780
LRNKREKEFV YQRPEEIPPN PKNPWENEID YDDSLTPIIP IEPVLDTTDT LQSHNSISLE  840
TGNASQMVSV APTPAPNSLP ATISGSAHDP VLLDALLKNP ALVFTLTSGQ PNSMPSEDTV  900
RLLDMIKANA GALPAANITP NLPSPTPSSN FGTVRDLGLC SMTCKLNNYV YIVSSHDIFT  960
SLVHHSRLFL PVYF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-108	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kaladp0015s0104.1.p