PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0015s0085.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 404aa MW: 45155.4 Da PI: 4.7609 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.3e-19 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Kaladp0015s0085.1.p 35 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 84 79*******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.81E-31 | 34 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 35 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-14 | 35 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-35 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-19 | 35 | 93 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.981 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSRKRRANEQ AMEHQAGKMC PDVFVKESPR KAPKRYVGVR QRPSGRWVAE IKDTIQKIRV 60 WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPSEPCLTT PALPSKITKL LLHRLKARDC 120 NMEPKGKTQQ VTAERNDPDF DKVAGYRDFK EKDEGGFSTA HFTDEFLNDA EDYPACDDNL 180 FINDAEDYHA LPSSSLHACG TESQQTEVME HQSMCNSTSW SAVETSHMES DSKPGGEGEA 240 ETNREGIERP QVGALDFHFV DDVGKASAAE CYYSAFQIAE EIGEPLMEQG GGVGDEPAML 300 LNSVMRLMKY ERKFSASLYA FNGVTECLKL KVGAEIRCGD HLSNLRDACG RKKREDEDNV 360 ARKRDDKEAI GKEAEQAMEL SEGDSDLILW SCLDLQPICF VNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 35 | 100 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021679289.1 | 1e-101 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2C9WDA3 | 5e-99 | A0A2C9WDA3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_008867m | 1e-100 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-23 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0015s0085.1.p |