PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0014s0039.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 22223 Da PI: 7.327 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F + L H+r+H Kaladp0014s0039.1.p 108 HECAICGAEFASGQALGGHMRRH 130 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.17E-8 | 41 | 64 | No hit | No description |
Pfam | PF13912 | 3.6E-12 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.575 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.17E-8 | 103 | 130 | No hit | No description |
Pfam | PF13912 | 8.4E-12 | 107 | 131 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.093 | 108 | 130 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MVVSICFMLA HSLTHSNYNC YSSRTCITYI YPAKEWEGRG VYECKTCNRS FHSFQALGGH 60 RTSHKKPRIT THDETPLVSK SPHMGVNVPV PTIAALQLGS RTAKTRVHEC AICGAEFASG 120 QALGGHMRRH RVTNSPLETS TTETKVAAAE DGVRITLSLL APPAPEEASS RSDHNELLSL 180 DLNLPAASSS EEDETRTLVD CHY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014493277.1 | 2e-36 | zinc finger protein AZF2 | ||||
TrEMBL | A0A1S3THP5 | 5e-35 | A0A1S3THP5_VIGRR; zinc finger protein AZF2 | ||||
STRING | XP_010510676.1 | 3e-33 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-35 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0014s0039.1.p |