PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0014s0013.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 254aa    MW: 28696.1 Da    PI: 6.3488
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0014s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1995149256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++R++++++ql++Le+ F+++ ++  +++  LA++l+L+ rqV +WFqNrRa+ k
  Kaladp0014s0013.1.p  95 KSRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVK 149
                          79***************************************************88 PP
2HD-ZIP_I/II102.92.7e-3397186392
          HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                          +rr+s++q+k+LE+sF+ee kL p +Kv+lareL+l+prqva+WFqnrRAR+k+k+lEk y+ L+++++ l  e+++L++ev+ L++ lk
  Kaladp0014s0013.1.p  97 RRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVKSKNLEKMYDELREQFNVLYLEKQKLQNEVHILQTLLK 186
                          89**********************************************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-1969152IPR009057Homeodomain-like
SuperFamilySSF466891.11E-1880152IPR009057Homeodomain-like
PROSITE profilePS5007117.91291151IPR001356Homeobox domain
SMARTSM003891.5E-1693155IPR001356Homeobox domain
PfamPF000466.8E-1795149IPR001356Homeobox domain
CDDcd000861.97E-1695152No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MHSPQETGNP SQPDMEWSLP LAEANPSSSA NLPFSVSSAT NNHYPLMPYY PSFNHHHPHD  60
HSGFLMMETA ASPEMETREI TDMESSGNRQ SEEAKSRRRI SADQLKTLEK SFQEEAKLRP  120
AKKVSLAREL NLEPRQVAIW FQNRRARVKS KNLEKMYDEL REQFNVLYLE KQKLQNEVHI  180
LQTLLKRQVC CNQHVSTYEE ISVDNTSATA ALPAPPLADF YSVGEAGERF QTPHGLPCTQ  240
GTPAWAAQLP PEP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-32homeobox 51