PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0014s0001.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 388aa MW: 42976.7 Da PI: 7.2864

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0014s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	7.8e-29	42	92	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAA+++gvc+T+LKriCRq+GI+RWP+Rki+++ Kaladp0014s0001.1.p 42 EKSVSLSVLRQYFSGSLKDAARSIGVCPTTLKRICRQHGISRWPSRKINKV 92 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.233	32	112	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-26	45	92	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.96E-21	277	371	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.8E-21	284	366	No hit	No description
PROSITE profile	PS51745	19.216	287	369	IPR000270	PB1 domain
SMART	SM00666	3.0E-18	287	369	IPR000270	PB1 domain
Pfam	PF00564	3.0E-14	288	366	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MFRCACRVER RDLSILTDND ICWLIKNFKC VSFAEAVVRS IEKSVSLSVL RQYFSGSLKD 60 AARSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSTTG 120 GLVAARSLVH DLDKGKILHH DMTCNFPTQE MAPCVEISAI KLEESYCGMG GNHLRAEQDI 180 CFQNTGQDVL YKSRFPSVPS TDDAKSEEMD VMAKSPLNKQ GRRLESFLSR NSSSLGDDGI 240 TDHNQPASSS MTDSSNGSLM NGSSSSPPSQ EDIYMREKAS ADDTGSKITV KATFKEDTIR 300 LKFEPSSGCF QLYEEVAKRF KLQVGNFKLK YRDDEDELVV LESELDWQEC LEVIQSVGSR 360 SVKFFVLEIP CVMGSSGSSN CFLGRGS*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MFRCACRVER RDLSILTDND ICWLIKNFKC VSFAEAVVRS IEKSVSLSVL RQYFSGSLKD  60
AARSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ TVLDSVQGVE GGLKFDSTTG  120
GLVAARSLVH DLDKGKILHH DMTCNFPTQE MAPCVEISAI KLEESYCGMG GNHLRAEQDI  180
CFQNTGQDVL YKSRFPSVPS TDDAKSEEMD VMAKSPLNKQ GRRLESFLSR NSSSLGDDGI  240
TDHNQPASSS MTDSSNGSLM NGSSSSPPSQ EDIYMREKAS ADDTGSKITV KATFKEDTIR  300
LKFEPSSGCF QLYEEVAKRF KLQVGNFKLK YRDDEDELVV LESELDWQEC LEVIQSVGSR  360
SVKFFVLEIP CVMGSSGSSN CFLGRGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002530298.1	1e-123	protein NLP9
Swissprot	O22864	9e-78	NLP8_ARATH; Protein NLP8
TrEMBL	B9SWC9	1e-121	B9SWC9_RICCO; Transcription factor, putative
STRING	XP_002530298.1	1e-122	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	3e-69	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0014s0001.1.p

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]