PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0012s0093.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 912aa MW: 101905 Da PI: 6.2018

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0012s0093.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.8	5e-05	684	744	1	54
TT--SS--HHHHHHHHHHHHHSSS--H..HHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsa..eereeLAkkl.....gLterqVkvWFqNrRak 54 +rkR ++++q+ + e++ +++ +++ ++++ A+kl ++t +q k+W Nr+a+ Kaladp0012s0093.2.p 684 KRKRSVMNEKQISVIEKALLEEPDMQRkaASIQSWADKLcsygsEVTSSQLKNWLNNRKAR 744 79****************977776511689**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.9E-4	677	747	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.252	681	748	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MRISKEETSS RCGQVIDLVT AVKELHRLTP QELDKSLKDC EDFTLKHTTE KGSTLKINLE 60 RLAQLLPVHL ISKLVASRRD EDLFKYMLCG GRLLHTLYDL ATRHSKLEQI LLDDLKASEQ 120 LIDLVFYTLT VLSNRQEYQD WGSLALVLSA LATCYLYLLP QILSLHWHEL AQILVAHPKV 180 DKFIDVAFRV VRLDIRSLQK TLSSESHDLS TSSTAEQSVN YLSQQCEASL QLIASLCHQK 240 LFRERILKNK EVCREGILPL ARSILNLKLC SFLECAAVVA AVSRLKSKII SILLQLCEVE 300 SPSYLDEVAS YPKSLEVAKD IALEVLEVLK KALSRDLRPP DPCSEKPYPM GLLQPNALRL 360 VDMLSDDSNF RSYIAIHFPE VLTAVVSYPH GEFLSAWCSS VPPLGEEDVS LEFDPFAAAG 420 WILDSFSSLG LLNATYSESN FIQNSLPQAS HAHYKTSLLI KIIANLHFFG PEVCKANEKN 480 LFFNKFYECS FKDLPKASQA YAQKAGTVHK NLRSLLAHAE SLVPSFVNED DIQLFRAFFD 540 QLQTLNPPHE FEARPAESKF DSISSWDKFP KLDINGHFQS NGNQVLLARE HENGVDSRKE 600 QVSENAATRA ENNQNFLMEV DICPQNDESS ESDSYNTRGK NCIDQSDNNE FPHASERVAE 660 SGSTGLQDND YLRTLRSEEN RPRKRKRSVM NEKQISVIEK ALLEEPDMQR KAASIQSWAD 720 KLCSYGSEVT SSQLKNWLNN RKARLARAAA KDVRVGPDGE MGFLEKQGGS VSGLRDSPEN 780 PAEGISGSSS ASARASKTPN IITGSSTQLA EGHHAWDLGH NVSLINDLGE EIGKGKVHQL 840 QGEWFGRKLL ESCTCVIDVT ELTGDVSKHG RVPFPSEATG DTFEETVKKL GAMCVVWDVG 900 KMRPQPPQQR K*

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MRISKEETSS RCGQVIDLVT AVKELHRLTP QELDKSLKDC EDFTLKHTTE KGSTLKINLE  60
RLAQLLPVHL ISKLVASRRD EDLFKYMLCG GRLLHTLYDL ATRHSKLEQI LLDDLKASEQ  120
LIDLVFYTLT VLSNRQEYQD WGSLALVLSA LATCYLYLLP QILSLHWHEL AQILVAHPKV  180
DKFIDVAFRV VRLDIRSLQK TLSSESHDLS TSSTAEQSVN YLSQQCEASL QLIASLCHQK  240
LFRERILKNK EVCREGILPL ARSILNLKLC SFLECAAVVA AVSRLKSKII SILLQLCEVE  300
SPSYLDEVAS YPKSLEVAKD IALEVLEVLK KALSRDLRPP DPCSEKPYPM GLLQPNALRL  360
VDMLSDDSNF RSYIAIHFPE VLTAVVSYPH GEFLSAWCSS VPPLGEEDVS LEFDPFAAAG  420
WILDSFSSLG LLNATYSESN FIQNSLPQAS HAHYKTSLLI KIIANLHFFG PEVCKANEKN  480
LFFNKFYECS FKDLPKASQA YAQKAGTVHK NLRSLLAHAE SLVPSFVNED DIQLFRAFFD  540
QLQTLNPPHE FEARPAESKF DSISSWDKFP KLDINGHFQS NGNQVLLARE HENGVDSRKE  600
QVSENAATRA ENNQNFLMEV DICPQNDESS ESDSYNTRGK NCIDQSDNNE FPHASERVAE  660
SGSTGLQDND YLRTLRSEEN RPRKRKRSVM NEKQISVIEK ALLEEPDMQR KAASIQSWAD  720
KLCSYGSEVT SSQLKNWLNN RKARLARAAA KDVRVGPDGE MGFLEKQGGS VSGLRDSPEN  780
PAEGISGSSS ASARASKTPN IITGSSTQLA EGHHAWDLGH NVSLINDLGE EIGKGKVHQL  840
QGEWFGRKLL ESCTCVIDVT ELTGDVSKHG RVPFPSEATG DTFEETVKKL GAMCVVWDVG  900
KMRPQPPQQR K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652083.1	0.0	PREDICTED: nodulin homeobox
TrEMBL	F6HQ32	0.0	F6HQ32_VITVI; Uncharacterized protein
STRING	VIT_07s0104g01050.t01	0.0	(Vitis vinifera)

Link Out ? help Back to Top
Phytozome	Kaladp0012s0093.2.p