PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0012s0093.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 915aa MW: 102233 Da PI: 6.1366 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.8 | 5e-05 | 687 | 747 | 1 | 54 |
TT--SS--HHHHHHHHHHHHHSSS--H..HHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsa..eereeLAkkl.....gLterqVkvWFqNrRak 54 +rkR ++++q+ + e++ +++ +++ ++++ A+kl ++t +q k+W Nr+a+ Kaladp0012s0093.1.p 687 KRKRSVMNEKQISVIEKALLEEPDMQRkaASIQSWADKLcsygsEVTSSQLKNWLNNRKAR 747 79******************977776511689****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-4 | 680 | 750 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.252 | 684 | 751 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0060195 | Biological Process | negative regulation of antisense RNA transcription | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 915 aa Download sequence Send to blast |
MRISKEETSS RCGQVIDLVT AVKELHRLTP QELDKSLKDC EDFTLKHTTE KGSTLKINLE 60 RLAQLLPVHL ISKLVASRRD EDLFKYMLCG GRLLHTLYDL ATRHSKLEQI LLDDLKASEQ 120 LIDLVFYTLT VLSNRQEYQD WGSLALVLSA LATCYLYLLP QILSLHWHEL AQILVAHPKV 180 DKFIDVAFRV VRLDIRSLQK TLSSESHDLS TSSTAEQSVN YLSQQCEASL QLIASLCHQK 240 LFRERILKNK EVCREGILPL ARSILNLKLC SFLECAAVVA AVSRLKSKII SILLQLCEVE 300 SPSYLDEVAS YPKSLEVAKD IALEVLEVLK KALSRDLRPP DPCSEKPYPM GLLQPNALRL 360 VDMLSDDSNF RSYIAIHFPE VLTAVVSYPH GEFLSAWCSS VPPLGEEDVS LEFDPFAAAG 420 WILDSFSSLG LLNATYSESN FIQNSLPQAS HAHYKTSLLI KIIANLHFFG PEVCKANEKN 480 LFFNKFYECS FKDLPKASQA YAQKAGTVHK NLRSLLAHAE SLVPSFVNED DIQLFRAFFD 540 QLQTLNPPHE FEARPAESKF DSISSWDKFP KLDINGHFQE AQSNGNQVLL AREHENGVDS 600 RKEQVSENAA TRAENNQNFL MEVDICPQND ESSESDSYNT RGKNCIDQSD NNEFPHASER 660 VAESGSTGLQ DNDYLRTLRS EENRPRKRKR SVMNEKQISV IEKALLEEPD MQRKAASIQS 720 WADKLCSYGS EVTSSQLKNW LNNRKARLAR AAAKDVRVGP DGEMGFLEKQ GGSVSGLRDS 780 PENPAEGISG SSSASARASK TPNIITGSST QLAEGHHAWD LGHNVSLIND LGEEIGKGKV 840 HQLQGEWFGR KLLESCTCVI DVTELTGDVS KHGRVPFPSE ATGDTFEETV KKLGAMCVVW 900 DVGKMRPQPP QQRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652083.1 | 0.0 | PREDICTED: nodulin homeobox | ||||
TrEMBL | F6HQ32 | 0.0 | F6HQ32_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0104g01050.t01 | 0.0 | (Vitis vinifera) |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0012s0093.1.p |