PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0012s0069.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 497aa    MW: 55316.2 Da    PI: 5.1198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0012s0069.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14297343455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kaladp0012s0069.2.p 297 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 343
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-19293361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-16296347No hitNo description
Gene3DG3DSA:4.10.280.108.3E-19297360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-12297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MIQEDLGLVR HVKTFFHDYN RSQHAPPPKP ALSGHSTSNP ATSSQCFHSP PPFAGMSSNN  60
NHSNPGNNDE DEDEEEENEE PGGLDSEAGT GRVAGEVSEL MQMEISDLDI RVRSPEDASN  120
NLESDFNVLP ASRIQKNKDD GHFTTESYKI DSARRWALMQ NQMRTGGVHL LQPPPFSETQ  180
LLEDLTQEDS HYSHTVSSIL HHHQQPPLPE SFFSAEDLIL SADSAFAKWT LYGDQVAATT  240
TGGAGSQWLL KFILFTVPYL HGKYPEENEP CKSADMSEAA QQLKKGAGAP QEDMSVNHVL  300
AERRRREKLN ERFVILRSLV PFVTKMDKAS ILGDTIEYLK QLRRKIQDLE VKAKQMEVEQ  360
RSGLTSQDRT WSGTGSEKRK MRAVEVTGSP KPVTVVEPPP PPPPVELLGL MDANTVQVSI  420
IETDALVELQ CPYREALLLD VMMKLRDLRI EVTAVQSSVT DGSFVAELRA KVKENVNGKK  480
MKIAEVKRAI YQIIPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14296346757Transcription factor MYC2
5gnj_B2e-14296346757Transcription factor MYC2
5gnj_E2e-14296346757Transcription factor MYC2
5gnj_F2e-14296346757Transcription factor MYC2
5gnj_G2e-14296346757Transcription factor MYC2
5gnj_I2e-14296346757Transcription factor MYC2
5gnj_M2e-14296346757Transcription factor MYC2
5gnj_N2e-14296346757Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306ERRRRE
2302307RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028804153.11e-144basic helix-loop-helix protein A
SwissprotE3SXU41e-119BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0C7DWA51e-147A0A0C7DWA5_9MAGN; BHLH3 protein (Fragment)
STRINGEOX947961e-142(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-53bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]