PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s1305.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 36609.1 Da PI: 9.2802 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.7e-52 | 16 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeel+v+yL++kv+g++++l ++i e+d+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Kaladp0011s1305.1.p 16 LPPGFRFFPTDEELLVHYLCRKVAGHQFSL-QIIGEIDLYKFDPWVLPSKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 104 79***************************9.89***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Kaladp0011s1305.1.p 105 VITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 141 **99.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-66 | 11 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 16 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-26 | 17 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MGVEVARTNP LNQLALPPGF RFFPTDEELL VHYLCRKVAG HQFSLQIIGE IDLYKFDPWV 60 LPSKANFGEK EWYFFSPRDR KYPNGSRPNR VAGSGYWKAT GTDKVITTEG RKVGIKKALV 120 FYIGKAPKGT KTNWIMHEYR LFEASRRRTG PKLDDWVLCR IYKKNSSQQK AVQSASVSSK 180 EQSVGSPDAS SPSSHLDDVL DSLPELEPSY VNLRRMNSLK ALLQDDKINL QTLGSGNFDW 240 ATLAGLSTLP EVVAGSQPHS HQAQNLNVYS NDVNAPGGYQ SGWSQFMGSF GNQFDEEVQS 300 EIKMGRADGS VAWGQSSGLF GYGSGYGYR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-103 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-103 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-103 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-103 | 1 | 170 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-103 | 1 | 170 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-103 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-103 | 1 | 170 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006464708.1 | 1e-140 | NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-128 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A2P5BA67 | 1e-139 | A0A2P5BA67_TREOI; NAC domain containing protein | ||||
STRING | XP_006464708.1 | 1e-140 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-114 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s1305.1.p |
Publications ? help Back to Top | |||
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