PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s1304.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 384aa MW: 42041.8 Da PI: 8.2482 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 20 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkkv++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Kaladp0011s1304.1.p 20 LPPGFRFHPTDEELVVHYLKKKVASSPLPV-SIIAEVDLYKYDPWELPGKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 108 79****************************.89***************8888899*********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+++ ++++vg+kk Lvfy g+ p+g+k++W+mheyrl Kaladp0011s1304.1.p 109 PVMTAsGTQKVGVKKALVFYGGKPPRGVKSNWIMHEYRL 147 ***9977888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-64 | 17 | 183 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.321 | 20 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-28 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045995 | Biological Process | regulation of embryonic development | ||||
GO:0048317 | Biological Process | seed morphogenesis | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MESTDSSAGG GGSGSHHLNL PPGFRFHPTD EELVVHYLKK KVASSPLPVS IIAEVDLYKY 60 DPWELPGKAT FGEHEWYFFS PRDRKYPNGA RPNRAATSGY WKATGTDKPV MTASGTQKVG 120 VKKALVFYGG KPPRGVKSNW IMHEYRLVDN KTTSNNRHLA FDLASKKNSL RLDDWVLCRI 180 YKKSNSSKGI MDNEDDRPGD SSIMDEMILS SSVPPSLNVA GDNKFYLPNN ISSSSTFNNT 240 SAASLVDNGQ ALYERGLMST ASNNNNNNGS FSMSQLVSQS ANSFSLKRPL PHPHLFCWLD 300 GEQEQAAATM GGDHNGPPSK RGGHLLQGDT SLSAMVSLHN HQAQLQVPSQ TASLLHQLSH 360 VGDDESYRQH YPLAGASLNW YLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-74 | 17 | 186 | 12 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00361 | DAP | Transfer from AT3G15510 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013464756.1 | 1e-119 | NAC transcription factor 56 | ||||
Refseq | XP_028055946.1 | 1e-119 | NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-103 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A072VB10 | 1e-117 | A0A072VB10_MEDTR; NAC transcription factor-like protein | ||||
STRING | cassava4.1_010976m | 1e-117 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-100 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s1304.1.p |
Publications ? help Back to Top | |||
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