PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s1278.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRF

Protein Properties

Length: 493aa MW: 53188.6 Da PI: 8.7119

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s1278.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.4e-23	173	217	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+ v ++k+CE+H+hrgr rsrk +e+ Kaladp0011s1278.1.p 173 DPEPGRCRRTDGKKWRCSNGVALDQKYCEKHVHRGRPRSRKLVEA 217 79***************************************9985 PP
2	QLQ	47.4	5.9e-17	115	147	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +FTaaQ+ +L++Q++++Ky++++ PvP +Ll++ Kaladp0011s1278.1.p 115 PFTAAQWKELERQAMVFKYMMHSIPVPYDLLLP 147 8*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.6E-9	114	150	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.996	115	150	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.5E-11	115	147	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.223	173	217	IPR014977	WRC domain
Pfam	PF08879	4.1E-19	174	216	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MSMDLCRPFL SGDGSDYDLG VGISGPASNM NRSCMMMMPM SMMGSSGGEI LSHSVAAEVV 60 DVRTKLMLEQ QHHQQLQQQQ QPFDMYAATC GGSVIKSPGN GGMAAAAAAS MGFFPFTAAQ 120 WKELERQAMV FKYMMHSIPV PYDLLLPFIT ATNNDPSGVR RDSHLLRFLK NGDPEPGRCR 180 RTDGKKWRCS NGVALDQKYC EKHVHRGRPR SRKLVEAASS DFNNKSNKKP RPLPQAQPNA 240 PPPAPVSGSQ NGAGSDLKIP RSAAVYANAA HGNQPSSVPA SLLPQSHPRN NVDWSEGQWN 300 RLMAQSKRGD APERSHYSNA SLYHQQLSLN SYAQFASAHD DSQSKREFEL FLNPDLKKPL 360 MDDAWTANAA STHSCNGLVS LGLSMGHVYN VVDEMSVTEQ GKQPQMGNWL TQSGGPLGEV 420 LRPTATSSPT TAAASDSCNN KNSPQVTSSS PSGVLQKAVA SHSDSTSHSS QPKSGLQWLS 480 QDKLPSSPGQ HV*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MSMDLCRPFL SGDGSDYDLG VGISGPASNM NRSCMMMMPM SMMGSSGGEI LSHSVAAEVV  60
DVRTKLMLEQ QHHQQLQQQQ QPFDMYAATC GGSVIKSPGN GGMAAAAAAS MGFFPFTAAQ  120
WKELERQAMV FKYMMHSIPV PYDLLLPFIT ATNNDPSGVR RDSHLLRFLK NGDPEPGRCR  180
RTDGKKWRCS NGVALDQKYC EKHVHRGRPR SRKLVEAASS DFNNKSNKKP RPLPQAQPNA  240
PPPAPVSGSQ NGAGSDLKIP RSAAVYANAA HGNQPSSVPA SLLPQSHPRN NVDWSEGQWN  300
RLMAQSKRGD APERSHYSNA SLYHQQLSLN SYAQFASAHD DSQSKREFEL FLNPDLKKPL  360
MDDAWTANAA STHSCNGLVS LGLSMGHVYN VVDEMSVTEQ GKQPQMGNWL TQSGGPLGEV  420
LRPTATSSPT TAAASDSCNN KNSPQVTSSS PSGVLQKAVA SHSDSTSHSS QPKSGLQWLS  480
QDKLPSSPGQ HV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-34	growth-regulating factor 7

Link Out ? help Back to Top
Phytozome	Kaladp0011s1278.1.p