PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s1243.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 245aa MW: 26273.7 Da PI: 6.7009

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s1243.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.6	2e-36	24	82	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++ l+cprC+s ntkfCyynny+lsqPr++CkaCrryWt+GG+lrn+PvGg++rk+ k+ Kaladp0011s1243.1.p 24 QTPLPCPRCESLNTKFCYYNNYNLSQPRHYCKACRRYWTQGGSLRNIPVGGATRKHSKR 82 56789**************************************************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-22	21	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	26	81	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPTADSLPNR AARFGPPASG ASNQTPLPCP RCESLNTKFC YYNNYNLSQP RHYCKACRRY 60 WTQGGSLRNI PVGGATRKHS KRYRHPAAAT TSHHSPASNS TSAASSPTRV SRGQTQLAIT 120 DDPNAKRHGE HRQQVAEEED ERVWSGVNLD LNEADCSFSS LLNENGHRST GYEFGYGFGL 180 GLMPGNDDFG FGEVGDGSVN AASGLVNPCA GTETWQIGSG RVDVGDCFGW ADLPISTSSN 240 DLVD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	6e-44	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	6e-44	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	6e-44	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-32	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Kaladp0011s1243.1.p