PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s1017.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 627aa MW: 69028.6 Da PI: 8.5846 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 11 | 102 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv+ d ++ l+lp kf+ ++ ++ ++++ l+d+s r+W+v + +k g++ ++kGW++F ka++L+ gD+vvF++ + Kaladp0011s1017.2.p 11 FFKVM--IDEDFLRVLYLPPKFT-RIapDL--LKNTKTYLQDLSERKWNVAV--SKENGSFAIKKGWSDFGKAHNLEIGDIVVFHYFPGR 93 89999..555555679******9.674644..46678***************..99999**************************87434 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 f +v++f++ Kaladp0011s1017.2.p 94 YF--TVQIFNR 102 55..8999887 PP | |||||||
2 | B3 | 40.8 | 4e-13 | 554 | 620 | 31 | 99 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k ++l+d +r+W v + k+++ +lt+GW+ F +an+++ gD ++Fk+ ++e+++ v+++r+ Kaladp0011s1017.2.p 554 SDAKLVILRDAASRVWPVHY--YHKPSMKILTTGWSAFSQANKVQLGDECIFKVAPEEETTYDVSIVRQ 620 456789**************..89999999***********************9877999999999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-21 | 6 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.985 | 9 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.86E-20 | 10 | 101 | No hit | No description |
SMART | SM01019 | 5.5E-15 | 11 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-15 | 11 | 102 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.001 | 518 | 621 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.646 | 523 | 621 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-10 | 552 | 620 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-12 | 555 | 619 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-11 | 556 | 619 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.92E-9 | 559 | 619 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MGSLRETIVS FFKVMIDEDF LRVLYLPPKF TRIAPDLLKN TKTYLQDLSE RKWNVAVSKE 60 NGSFAIKKGW SDFGKAHNLE IGDIVVFHYF PGRYFTVQIF NRSACDVRNF GVDVGSTRKR 120 RRPEVIAADK NGKPAGNRDL DPLTAAPMES YKKGKREPAD FVVPMESNKR GKREPADFGD 180 ADIQFLMIDR NRVDEKREDR MVIDLSSYEM PNAEATSVIQ KAANGSPVPH AGVLVKHEAE 240 PGSTDAGNYD LPAADVVSVE QWAGNGPLIP HAGAVVQFKA EPGSMEVANL KQETKWDVVL 300 HESAKQMAID RSWHSDVKRE VHDTLAVGAP SRMTPMSPKY DAKSEVKKLS TAKPVVKIKK 360 EPGIQTSEET VIDLSDYKMS TADVKGSKER AGSRASALFA GSLVKCKAEP GSAEVSNIKQ 420 EMQCNAELPE RMKPVEIRRS SYAVVNRKVC EYDTTVAPGH TAPLVPKCDT NSDFLKLATP 480 KSGREAKTPY APGQSGNAFV KVKKEPQTET FEETGLAFVT AGAGDLHCPI TSASSLFLEL 540 PASLPLFRLT SQTSDAKLVI LRDAASRVWP VHYYHKPSMK ILTTGWSAFS QANKVQLGDE 600 CIFKVAPEEE TTYDVSIVRQ GSRPIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 121 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 6e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s1017.2.p |