PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0974.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 19830.5 Da PI: 7.3011 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142 | 1.9e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r+da+sslvyeA ar+rdPvyG+vg i+ lq+q++ql Kaladp0011s0974.1.p 7 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFATVHKVFGASNVSKMLQELPLHQRSDAVSSLVYEASARMRDPVYGCVGAISYLQSQVSQL 96 7***************************************************************************************** PP DUF260 91 kaelallkee 100 + +la++++e Kaladp0011s0974.1.p 97 QMQLAVAQAE 106 ******9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.955 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MAGGNSPCAS CKLLRRRCAK DCIFAPYFPS DDPHKFATVH KVFGASNVSK MLQELPLHQR 60 SDAVSSLVYE ASARMRDPVY GCVGAISYLQ SQVSQLQMQL AVAQAEILCI QMQQEPAAAS 120 SLATIQPTLS VDDKSFLFNN SQLIGNNNIN QLSQLFNYSA SSTNNVINDY SLRDRESLWT 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-50 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-50 | 3 | 108 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874639.1 | 1e-85 | LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 9e-74 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A200PX25 | 5e-84 | A0A200PX25_9MAGN; Uncharacterized protein | ||||
TrEMBL | A0A444EI83 | 3e-84 | A0A444EI83_ENSVE; Uncharacterized protein | ||||
TrEMBL | M0U1B0 | 3e-84 | M0U1B0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr9P18030_001 | 5e-85 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-62 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0974.1.p |
Publications ? help Back to Top | |||
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