PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0746.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 42471.8 Da PI: 8.0997 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 122 | 167 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++ a++++ gR++k+c++rw++ Kaladp0011s0746.1.p 122 RGHWRPAEDAKLKKLVDQFGSQNWNLMAEHFP-GRSGKSCRLRWFNQ 167 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.9e-16 | 175 | 217 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++ eE+e+l++ ++++G++ W+ I+++++ gRt++ +k++w+ Kaladp0011s0746.1.p 175 TPFSDEEEEKLLKSHTLYGNK-WAMISKMFP-GRTDNAVKNHWHV 217 68*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.765 | 117 | 168 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-13 | 121 | 170 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-28 | 121 | 215 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 123 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-11 | 125 | 166 | No hit | No description |
Pfam | PF13921 | 1.8E-15 | 125 | 185 | No hit | No description |
PROSITE profile | PS51294 | 24.945 | 169 | 223 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-14 | 173 | 221 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 176 | 222 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.31E-10 | 176 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MKSQDLKNNA ANGYDSFPRL APPPPPLSLF GDIERREWMG LNMRRKSSSA FDLNQTSGRD 60 EEQNNFKSKF DLNERFYSEG RSDERRDQAV KIIKEVVDRD CHHVEVANDE RNENIQKICR 120 SRGHWRPAED AKLKKLVDQF GSQNWNLMAE HFPGRSGKSC RLRWFNQLDP KINKTPFSDE 180 EEEKLLKSHT LYGNKWAMIS KMFPGRTDNA VKNHWHVIMA RKQREQNNNK CVYKKLKPNP 240 ISPASNQTAA VASKEFVACR DESTVTTVSA TNTCLELMLT PTSVRASPCL FAKLPMGSNE 300 GSIHNIIDLN KQLSNFSGES DADSERTDLD SITCIKLNQK KLEVLGDVKD TGANEPEAIC 360 TYADDVRVCL KEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 122 | 222 | 7 | 107 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017976032.1 | 5e-70 | PREDICTED: transcription factor MYB29-like | ||||
TrEMBL | A0A2P5RQG0 | 4e-66 | A0A2P5RQG0_GOSBA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 6e-61 | myb domain protein 56 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0746.1.p |