PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0569.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 457aa MW: 51354.1 Da PI: 8.2062 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.7e-52 | 71 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp +k+k+++ ewyf+s dkky +g r nrat++gyWkatg+ Kaladp0011s0569.2.p 71 LAPGFRFHPTDEELVRYYLARKVCGKSCRI-DAISEADIYKMEPWDLPglSKMKSRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGN 159 579***************************.99***************6448888999******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v++ ++ +vg+kktLvf+kgr p g++t+Wvmheyrl Kaladp0011s0569.2.p 160 DRSVKH-ESCTVGMKKTLVFHKGRPPGGKRTNWVMHEYRL 198 ******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-62 | 64 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.146 | 71 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-27 | 73 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 457 aa Download sequence Send to blast |
MKNKTVRKAR TPFCLQSLFP REVSPDCLDT EASQSLRTLK FHRPSFRIRK PHKVTMICRE 60 NKPVSPPLPA LAPGFRFHPT DEELVRYYLA RKVCGKSCRI DAISEADIYK MEPWDLPGLS 120 KMKSRDLEWY FYSALDKKYG NGARMNRATS KGYWKATGND RSVKHESCTV GMKKTLVFHK 180 GRPPGGKRTN WVMHEYRLVD GELERLGIVK DGYVLCRVFQ KSGLGPPNGD QYASFDESQW 240 DDDKLVPGAE TGDEGLMSDE AEPRDGSSLE GNGQDENQDT QPEKTKDDLK ERSFLGAALV 300 LKNERNDTWS LPSIVRPKRP RYTGSDSSCN PVQNHSSSLP SDPSLSAKLA SPMADPADMA 360 ARTLLEFPLL NAHDAKENPQ PTPPSSSSRF DIASFNMPVH PSYLDLISNL QNEIHSVSAE 420 RENLRIEMMH AQAMIDVLQS RVNLLLQENE GLRRSA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 70 | 221 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 70 | 221 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 70 | 221 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 70 | 221 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 70 | 221 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-45 | 70 | 221 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 70 | 221 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619467.1 | 1e-132 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | A0A0V0I6Z3 | 1e-130 | A0A0V0I6Z3_SOLCH; Putative NAC domain-containing protein 78-like | ||||
TrEMBL | M1D2G1 | 1e-130 | M1D2G1_SOLTU; Uncharacterized protein | ||||
STRING | XP_009619467.1 | 1e-132 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 1e-105 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0569.2.p |