PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0512.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 349aa    MW: 39338.1 Da    PI: 6.4283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0512.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.6e-51191491128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrF+Ptdee+v +yL +k+ ++++++  +i ++d +k+ePwdLpk ++ +e+e y++++rd+ky+tg r+nratk+gyWkatgkdk
  Kaladp0011s0512.1.p  19 LPRGFRFRPTDEEIVYHYLIPKAMNSSFST-AAIGQADFNKCEPWDLPKIAYMGETERYYYCQRDRKYPTGLRTNRATKAGYWKATGKDK 107
                          799************************999.78***************88888999********************************** PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++     ++elvg+kktLvfy+grap+gekt+Wvmheyrl
  Kaladp0011s0512.1.p 108 EIYKGtginRRELVGMKKTLVFYTGRAPRGEKTNWVMHEYRL 149
                          ***9888877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5715174IPR003441NAC domain
PROSITE profilePS5100551.91519173IPR003441NAC domain
PfamPF023654.1E-2620149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MANSSKAARV LMEEDLMGLP RGFRFRPTDE EIVYHYLIPK AMNSSFSTAA IGQADFNKCE  60
PWDLPKIAYM GETERYYYCQ RDRKYPTGLR TNRATKAGYW KATGKDKEIY KGTGINRREL  120
VGMKKTLVFY TGRAPRGEKT NWVMHEYRLQ PHFSSSSMIP KNDGWVVSRV FHKNSNSSGG  180
TGSGMQEKTY SDVANDSFSQ MQRADSFSTD QLIREDFESL PPLVDLSALP PPPPPPNTLS  240
QIIQGLKPAM ISHDSSLQQS QPEAIRWLPT YANDDDQLIY SDLPAYYSPF GYEEPKDKNN  300
VVGAAMENEG KPLPQCATSA EISSHHYEHH NEMTSLGSIS DLSILWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-451717715169NO APICAL MERISTEM PROTEIN
1ut4_B7e-451717715169NO APICAL MERISTEM PROTEIN
1ut7_A7e-451717715169NO APICAL MERISTEM PROTEIN
1ut7_B7e-451717715169NO APICAL MERISTEM PROTEIN
3swm_A9e-451717718172NAC domain-containing protein 19
3swm_B9e-451717718172NAC domain-containing protein 19
3swm_C9e-451717718172NAC domain-containing protein 19
3swm_D9e-451717718172NAC domain-containing protein 19
3swp_A9e-451717718172NAC domain-containing protein 19
3swp_B9e-451717718172NAC domain-containing protein 19
3swp_C9e-451717718172NAC domain-containing protein 19
3swp_D9e-451717718172NAC domain-containing protein 19
4dul_A7e-451717715169NAC domain-containing protein 19
4dul_B7e-451717715169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010518044.17e-82PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9SQQ67e-81NAC46_ARATH; NAC domain-containing protein 46
TrEMBLA0A1R3KF583e-79A0A1R3KF58_9ROSI; No apical meristem (NAM) protein
TrEMBLA0A1R3KVD43e-79A0A1R3KVD4_COCAP; No apical meristem (NAM) protein
TrEMBLA0A1S2XI621e-79A0A1S2XI62_CICAR; NAC domain-containing protein 87
STRINGXP_010518044.13e-81(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.15e-76Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Oda-Yamamizo C, et al.
    Corrigendum: The NAC transcription factor ANAC046 is a positive regulator of chlorophyll degradation and senescence in Arabidopsis leaves.
    Sci Rep, 2016. 6: p. 35125
    [PMID:27759025]
  4. O'Shea C, et al.
    Structures and Short Linear Motif of Disordered Transcription Factor Regions Provide Clues to the Interactome of the Cellular Hub Protein Radical-induced Cell Death1.
    J. Biol. Chem., 2017. 292(2): p. 512-527
    [PMID:27881680]