PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0278.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRF | ||||||||
Protein Properties | Length: 279aa MW: 31702.1 Da PI: 9.8952 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.2 | 9.4e-26 | 156 | 199 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v +g+k+CErH++rgr+rsrk++e Kaladp0011s0278.2.p 156 DPEPGRCRRTDGKKWRCSRDVAPGHKYCERHMNRGRNRSRKPVE 199 79***************************************987 PP | |||||||
2 | QLQ | 49.4 | 1.4e-17 | 82 | 115 | 3 | 36 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i+ Kaladp0011s0278.2.p 82 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIK 115 9********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-10 | 80 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.26 | 81 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.9E-13 | 82 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.494 | 156 | 200 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.3E-21 | 157 | 199 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MDFQLMQWRE HQQQSEHQQK QQGEAVGIDR KQDQHQHQQQ QQSLSALPLF LTEPVSKVGN 60 MSVLPDMPST SKFPKMMMNG QFSSAQWQEL ELQAVIFRYM LAGASVPAEL LQPIKSSLLN 120 SSSFFLHHPL QHFSHYQPTT AAALLQSGYW GRAGMDPEPG RCRRTDGKKW RCSRDVAPGH 180 KYCERHMNRG RNRSRKPVEI PKPRTMAPPN CHNTGGGELW KTANPMMASP LGEASRARFS 240 SFGTAAPSVD MLQLNQRYIT ACWYCLKEVN WKPALYSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024955418.1 | 2e-87 | growth-regulating factor 3 isoform X1 | ||||
Swissprot | Q9SJR5 | 1e-61 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | V4SS15 | 2e-85 | V4SS15_9ROSI; Uncharacterized protein | ||||
STRING | XP_006481829.1 | 8e-87 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 1e-54 | growth-regulating factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0278.2.p |
Publications ? help Back to Top | |||
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