PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0278.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 392aa    MW: 43224.7 Da    PI: 9.7224
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0278.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.51.5e-25156199144
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                          d+epgrCrRtDGKkWRCsr+v +g+k+CErH++rgr+rsrk++e
  Kaladp0011s0278.1.p 156 DPEPGRCRRTDGKKWRCSRDVAPGHKYCERHMNRGRNRSRKPVE 199
                          79***************************************987 PP
2QLQ48.82.2e-1782115336
                  QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                          F+ aQ+q+L+ Q+ +++y++a++ vP+eLlq+i+
  Kaladp0011s0278.1.p  82 FSSAQWQELELQAVIFRYMLAGASVPAELLQPIK 115
                          9********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1080116IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.2681116IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-1282114IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.494156200IPR014977WRC domain
PfamPF088792.2E-21157199IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDFQLMQWRE HQQQSEHQQK QQGEAVGIDR KQDQHQHQQQ QQSLSALPLF LTEPVSKVGN  60
MSVLPDMPST SKFPKMMMNG QFSSAQWQEL ELQAVIFRYM LAGASVPAEL LQPIKSSLLN  120
SSSFFLHHPL QHFSHYQPTT AAALLQSGYW GRAGMDPEPG RCRRTDGKKW RCSRDVAPGH  180
KYCERHMNRG RNRSRKPVEI PKPRTMAPPN CHNTGGGELW KTANPMMASP LGEASRARFS  240
SFGTAAPSVD MLQLNQRSSN LLPISKSELN QTESLHSSTS DGRVLRRFFD DWPRPMAESG  300
PGGIHANPMG SSTSLSMSLP GNTASDVSLK LATGSGSEDA SAVERDRMQL SWMAQWGQHQ  360
AGPMGGPLAE ALRSSVTTTA SPTSVLHELA R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810585.11e-123PREDICTED: growth-regulating factor 3-like isoform X1
TrEMBLA0A2I4DTW31e-121A0A2I4DTW3_JUGRE; growth-regulating factor 3-like isoform X1
STRINGXP_006481829.11e-119(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.11e-68growth-regulating factor 4