PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0226.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 323aa    MW: 36117.6 Da    PI: 7.8073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0226.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-131462148
                         TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd  l+ ++  +G+g +W + ++++g++R++k+c++rw++yl
  Kaladp0011s0226.1.p 14 KGPWAPEEDAMLKAYIDAHGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                         79*********************************************97 PP
2Myb_DNA-binding35.42.5e-1170111346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           ++ eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  Kaladp0011s0226.1.p  70 GFSDEEDNVICSLYISIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                          699*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.243962IPR017930Myb domain
SuperFamilySSF466894.18E-2413109IPR009057Homeodomain-like
SMARTSM007178.1E-101364IPR001005SANT/Myb domain
PfamPF002491.7E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221569IPR009057Homeodomain-like
CDDcd001673.93E-61662No hitNo description
PROSITE profilePS5129419.90463117IPR017930Myb domain
SMARTSM007175.8E-1067115IPR001005SANT/Myb domain
PfamPF002491.0E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2270117IPR009057Homeodomain-like
CDDcd001671.09E-671113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRAPCCDKT LVKKGPWAPE EDAMLKAYID AHGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDNVIC SLYISIGSRW SVIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKQCNNIVSS SSSSTMEDTK DGMSDETQRL SNSALERLQL HIQLQNRPRT LNSVNGPTAH  180
WPKLLHPAQE RMIRSLTESQ NDINTPHQHK LDKLDECIGS SGSQIESMRQ GLEQLTSTPS  240
SLSGLQLQAE FENYMKSNSE IIAGKGDEER KELDGSFWWS GEMENKSSAS ISSNSWDDSY  300
SVINSAGGNL MMFHDYGLGY NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579086.11e-112transcription factor MYB36
SwissprotQ9FKL23e-96MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A067L5Z31e-107A0A067L5Z3_JATCU; MYB family protein
STRINGXP_004296741.11e-107(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-90myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]