PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0011s0178.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARR-B | ||||||||
Protein Properties | Length: 697aa MW: 75086.5 Da PI: 5.7522 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.2 | 6.9e-27 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +pr++W+++LH++Fv+av+qL G++kA+Pk+il++m+ ++Lt+e+v+SHLQkYR+ Kaladp0011s0178.1.p 209 RPRVVWNSDLHRKFVSAVNQL-GIDKAVPKKILDIMDDESLTRENVASHLQKYRM 262 59*******************.********************************8 PP | |||||||
2 | Response_reg | 79.7 | 9.6e-27 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+++ + l+++l++ ++ +v+++ ++ea+ell++++ +D+++ D++mp++dG++ll++i e +lp+i+++++++++++++ Kaladp0011s0178.1.p 21 VLCVDDDQTCLLWLENLLTSCQF-NVTTTLYAREAIELLRQNKtmYDIVISDVQMPDIDGFQLLETIGLEM-DLPVIMMSMFNNQDYVTR 108 89*********************.***************99999***********************6654.8***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l+Kp+ ee+ + Kaladp0011s0178.1.p 109 GVVHGAVDYLVKPVRLEEIQN 129 *****************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 4.55E-32 | 18 | 139 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.7E-37 | 18 | 142 | No hit | No description |
SMART | SM00448 | 5.9E-29 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 38.658 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-23 | 21 | 129 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.67E-26 | 22 | 135 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 3.7E-37 | 175 | 187 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-28 | 206 | 267 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.51E-17 | 207 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-23 | 210 | 262 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MAAMGQQAEE IDDKFPVGIR VLCVDDDQTC LLWLENLLTS CQFNVTTTLY AREAIELLRQ 60 NKTMYDIVIS DVQMPDIDGF QLLETIGLEM DLPVIMMSMF NNQDYVTRGV VHGAVDYLVK 120 PVRLEEIQNI WQHVLRKRKG VGNGKKLATL ENKSSQGAAA NGAVADSAAS AGEASNKRRR 180 APSDKEDEDY EEEEEDSGRE NEEQTSHKRP RVVWNSDLHR KFVSAVNQLG IDKAVPKKIL 240 DIMDDESLTR ENVASHLQKY RMYLKKISNG NPQQGVFGAL GGRHALDAMG YRGGRLPNSL 300 LSGYPPSLSG ILGARVSPGS GVNFRSISAS DLIQSGQSLR NSINPLAKLQ PSVMPSLQNG 360 SLFQGMMPGG FEQDPSQGGK ALAQLGSYSP GLGASGFGVS DNFVDPKVMM NGSANSSLML 420 PAPPQFPGSA PVPGQLRIGG VPGASGAGFM DRGGALESWK SAGQHPHNSL TGSRTFTEDH 480 NLPMNNNNAM NGIASTGIHQ QLLGFPQMSG NSNMQGENGI NNVDHMKQQE YNRELDNVFG 540 SLNLIIPPGG GGGIMGSVGM DQSHLGAVAN GGDFIGQQTG ILPADTSFKP NNDSFVPDQA 600 NANLPQDDFM PNGIDSLDDI VTAMIRRVFL KLHSLFIFNA WLLIAELGAR RRTTDHRRCS 660 WIPSSTSTPK ASESRGEPLA FGVCFFNHNA SAGVVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-23 | 205 | 268 | 1 | 64 | ARR10-B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 4e-81 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0011s0178.1.p |