PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0067.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 669aa    MW: 75045.6 Da    PI: 6.0298
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0067.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.2e-21127227198
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++ +++a+++       +++    ++l+  d +g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F 
  Kaladp0011s0067.3.p 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVASDMHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL 214
                          99****************************964333..4459************************************************ PP

                          E-SSSEE..EEEEE- CS
                   B3  84 ldgrsefelvvkvfr 98 
                            + +++el+v+v+r
  Kaladp0011s0067.3.p 215 --RGENGELRVGVRR 227
                          ..449999*****97 PP
2Auxin_resp111.96.4e-37253335183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha+st+s F+v+Y+Pr+s+seF+v+v+k++++ ++k+svGmRfkm+fe+e+++err+sGt+vgv++   + W +S+WrsLk
  Kaladp0011s0067.3.p 253 ASHALSTGSLFSVYYKPRTSRSEFIVSVNKYLESRNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVEENTAFGWADSEWRSLK 335
                          789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-43116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40123242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-20125227No hitNo description
PROSITE profilePS5086311.265127229IPR003340B3 DNA binding domain
PfamPF023629.3E-20127227IPR003340B3 DNA binding domain
SMARTSM010192.8E-19127229IPR003340B3 DNA binding domain
PfamPF065073.0E-34253335IPR010525Auxin response factor
PfamPF023092.7E-7539579IPR033389AUX/IAA domain
PROSITE profilePS5174526.693543627IPR000270PB1 domain
SuperFamilySSF542771.5E-11546620No hitNo description
PfamPF023093.4E-6590634IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAFTPPNHFS PMLRPGTIDD ALYKELWHAC AGPLVSLPRE GERVYYFPQG HMEQLEASTN  60
HGSDQKIPTF NLPSKILCKV VYVHPRAEPD TDEVYAQITL TPEPVQSEVT SPDDPLPEPE  120
TCKVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAS DMHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QQNNMPSSVI  240
SSHSMHLGVL ATASHALSTG SLFSVYYKPR TSRSEFIVSV NKYLESRNHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVEE NTAFGWADSE WRSLKVQWDE PSAILRPDRV SPWDLEPLVV  360
ASPPNSLSAT PAQRTKRARP PVLTSGMWKS HSDSPSAFSF CDPQRGRELY QSPKLSNSLA  420
FSTTTSIPAD SSNSLYWPNH GENAMDSYIP ISNVESAEKR QGNGNSCMLF GIKISDNSKN  480
EEAQTARMPG IILDKRPAIS VDVESDPHSE PSNVNHSDAP SLSCEPDKSH MRSPQELQSR  540
QVRSCTKVHM QGMAVGRAVD LTRYDCYEDL LSKLEEMFDI QGELSSTPKK WQVVYTDDEE  600
DMMMVGDDPW HEFCAMVRKI FIYTMEEVKN LAPKIKLNPK EEEAKPSIPD PEVILPTEDQ  660
SSVIGPNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.01635813355Auxin response factor 1
4ldw_A0.01635813355Auxin response factor 1
4ldw_B0.01635813355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431443.10.0auxin response factor 1 isoform X1
RefseqXP_024039738.10.0auxin response factor 1 isoform X1
RefseqXP_024039739.10.0auxin response factor 1 isoform X1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A2L1GGZ70.0A0A2L1GGZ7_9ROSA; Auxin response factor
STRINGXP_006431443.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]