PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0049.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 516aa    MW: 57670.7 Da    PI: 7.3929
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0049.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.4e-49301572128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ 
  Kaladp0011s0049.3.p  30 MPGFRFHPTEEELVEFYLRRKVEGKRFTV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 118
                          79*************************99.89***************888889************************************* PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + s   +++ +glkktLvfy+g+apkg +t+W+m+eyrl
  Kaladp0011s0049.3.p 119 IRSDnlSRSSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 157
                          **98777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5528183IPR003441NAC domain
PROSITE profilePS5100555.62429184IPR003441NAC domain
PfamPF023651.6E-2431157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNEPVNDEQR PIEQQEDQEE VGDRQQEMVM PGFRFHPTEE ELVEFYLRRK VEGKRFTVEL  60
ITFLDLYRYD PWELPAMAAI GEKEWFFYVP RDRKYRNGDR PNRVTTSGYW KATGADRMIR  120
SDNLSRSSIG LKKTLVFYSG KAPKGIRTSW IMNEYRLPHH ETEKHHKQHQ HQQAEISLCR  180
VYKRAGVEDH PSLVRSLPST SSMRPSSTSS SSRGSGQSSN SDRRKHSTDN NQFAAASMGR  240
SNAFQAAFGA SVGLLSSHHH HQQHLFIVNN CSMANDATTD GSSSNTTATT TDNVTTTLRL  300
SKIKNGSSTA INPPAAADAA LSKDNDSYCL TPIGGIAAAV FPSSSSSVLG LLLAEEAHHH  360
MTNQDKMNML IPSPNHHYAD DTSSSISKTQ FAGASSAPML INKPYHGDDI NSDDELHKLV  420
LNYHHQQPPN QQLIQFHNSH NNLHIHHNPT TNQFPSVMLP SQSHLLSFSN SLRGTSVNST  480
ANPAAAFSDR FWEWNPIISE ASRSGYDINN NSQFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-53191847165NO APICAL MERISTEM PROTEIN
1ut4_B3e-53191847165NO APICAL MERISTEM PROTEIN
1ut7_A3e-53191847165NO APICAL MERISTEM PROTEIN
1ut7_B3e-53191847165NO APICAL MERISTEM PROTEIN
4dul_A3e-53191847165NAC domain-containing protein 19
4dul_B3e-53191847165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2C9VPE61e-119A0A2C9VPE6_MANES; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-95NAC domain containing protein 35