PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0915.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 324aa    MW: 36646.2 Da    PI: 6.6115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0915.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.96.2e-3037753128
                  NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++ ewyf+s  dkky +g r nrat +gyWkatg+d++v++ ++++vg+kktLvf+kgrap g++t+Wvmheyrl
  Kaladp0008s0915.2.p   3 SRDLEWYFYSALDKKYGNGARMNRATCKGYWKATGNDRSVKH-ESRTVGMKKTLVFHKGRAPGGKRTNWVMHEYRL 77 
                          45679*************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.4031100IPR003441NAC domain
SuperFamilySSF1019418.11E-373100IPR003441NAC domain
PfamPF023652.0E-13877IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRSRDLEWYF YSALDKKYGN GARMNRATCK GYWKATGNDR SVKHESRTVG MKKTLVFHKG  60
RAPGGKRTNW VMHEYRLVDE ELERLGIVKD GFVLCRVFQK SGLGPPNGDQ YAPFDESEWD  120
DNQLVLVPGS ETGDEGLVSD ETEPRDSSSL EGNNQDEKHQ ETQPEKTENH LRERDFLGTA  180
LVCKNEKLDS WSLPSIVRAK RPRHFGSDPS RTKSSSSSLP SDPSLSIKTA VTMADAAALA  240
ARTLLEFPKE SPQPSRFDIA SFDIPVHPSY LDLINNLQKE IHMVSADRDK FRIEMMHAQA  300
MIDVLQSRIN FLLQENEELK KSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-29710075168NAC domain-containing protein 19
3swm_B4e-29710075168NAC domain-containing protein 19
3swm_C4e-29710075168NAC domain-containing protein 19
3swm_D4e-29710075168NAC domain-containing protein 19
3swp_A4e-29710075168NAC domain-containing protein 19
3swp_B4e-29710075168NAC domain-containing protein 19
3swp_C4e-29710075168NAC domain-containing protein 19
3swp_D4e-29710075168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016432498.11e-104PREDICTED: NAC domain-containing protein 78-like
RefseqXP_019234549.11e-104PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6KYG71e-103A0A1J6KYG7_NICAT; Nac domain-containing protein 78
TrEMBLA0A1S3WXV31e-103A0A1S3WXV3_TOBAC; NAC domain-containing protein 78-like
STRINGXP_009619467.11e-103(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-61NAC domain containing protein 52