PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0902.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 350aa MW: 37854.4 Da PI: 6.1376

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0902.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+Fs++ L H++ H Kaladp0008s0902.1.p 102 FTCTFCLKTFSTSQALGGHQNAH 124 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-6	98	129	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-5	99	128	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.9E-6	101	126	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.614	102	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	104	124	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEQPPPPPPP FFPPNPPPEI VNVDDQDDPL ELGLGLPNVS QGNNNNNHDN NAQNVPSNIV 60 QPAAVIVGHN NEEVLRLGGN RDSTAGIGGG RQIPSPRSDK VFTCTFCLKT FSTSQALGGH 120 QNAHKEERQA ARNLLADVQR DDAQAADMGR HQPLLESYGQ GLMSQHVAPN YNNPFQTPAY 180 GDVIQRPSNP SMTLPQPTPL LTGHGQHHPW QASGGSRGLG GFGSGSSMSS TPERPPPHYP 240 IYRGYDSSHF TMGFNTNIYN PFPRVPSWQS RATEQRLAYQ FRPSYSQHQQ GRPVGGHDNM 300 GLLGTGLSGR IRNHEAGQGS GNNQREEGGN EQPADDNAPD EELDLTLKL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEQPPPPPPP FFPPNPPPEI VNVDDQDDPL ELGLGLPNVS QGNNNNNHDN NAQNVPSNIV  60
QPAAVIVGHN NEEVLRLGGN RDSTAGIGGG RQIPSPRSDK VFTCTFCLKT FSTSQALGGH  120
QNAHKEERQA ARNLLADVQR DDAQAADMGR HQPLLESYGQ GLMSQHVAPN YNNPFQTPAY  180
GDVIQRPSNP SMTLPQPTPL LTGHGQHHPW QASGGSRGLG GFGSGSSMSS TPERPPPHYP  240
IYRGYDSSHF TMGFNTNIYN PFPRVPSWQS RATEQRLAYQ FRPSYSQHQQ GRPVGGHDNM  300
GLLGTGLSGR IRNHEAGQGS GNNQREEGGN EQPADDNAPD EELDLTLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	1e-11	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0008s0902.1.p