PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0855.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 328aa MW: 36361 Da PI: 9.3067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0855.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.5e-53	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeel+v+yL++kv+g++++l ++i evd+yk++Pw Lp+k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Kaladp0008s0855.1.p 16 LPPGFRFYPTDEELLVHYLCRKVSGQQFSL-QIIGEVDLYKFDPWVLPSKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 104 79*************************9.89***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Kaladp0008s0855.1.p 105 VITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 141 99.999****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-66	11	165	IPR003441	NAC domain
PROSITE profile	PS51005	60.467	16	164	IPR003441	NAC domain
Pfam	PF02365	5.9E-27	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGVEVARTNP FNQLALPPGF RFYPTDEELL VHYLCRKVSG QQFSLQIIGE VDLYKFDPWV 60 LPSKANFGEK EWYFFSPRDR KYPNGSRPNR VAGSGYWKAT GTDKVITTEG RKVGIKKALV 120 FYIGKAPKGT KTNWIMHEYR LFEGSRRHSG PKLDDWVLCR IYKKNSSQLK AGRNASVLSQ 180 DQCAGSPASS LSSHLDDVLD SLPELEPSSV NLRRMSSLRA LLQDDKINLQ KLGSGNFDWV 240 TLAGLSTLPE VAAGPQPLQQ PQAQNMNGFI NDVYAPGMYQ NGWGQFQGSF GNRFDEEVES 300 EIKMGRVDGS GGSGLYGYGS GFGYGSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-100	1	170	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-100	1	170	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-100	1	170	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-100	1	170	4	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-100	1	170	4	171	NAC domain-containing protein 19
4dul_B	1e-100	1	170	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010089503.1	1e-138	NAC domain-containing protein 72
Swissprot	A0A3Q7HH64	1e-124	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	W9QI39	1e-137	W9QI39_9ROSA; NAC domain-containing protein 72
STRING	XP_010089503.1	1e-138	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-112	NAC family protein

Link Out ? help Back to Top
Phytozome	Kaladp0008s0855.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]