PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0854.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 308aa MW: 34427.9 Da PI: 9.2528

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0854.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175	2.2e-54	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkkv++++l++ ++i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk Kaladp0008s0854.1.p 18 LPPGFRFHPTDEELVVHYLKKKVTSSPLPV-SIIAEVDLYKYDPWELPGKTTFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDK 106 79**************************.89***********8888899******************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+++ ++++vg+kk Lvfy g+ p+g+kt+W+mheyrl Kaladp0008s0854.1.p 107 PVMTAgGTQKVGVKKALVFYGGKPPRGVKTNWIMHEYRL 145 977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-64	14	180	IPR003441	NAC domain
PROSITE profile	PS51005	62.249	18	180	IPR003441	NAC domain
Pfam	PF02365	8.7E-29	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MESTDSYAGG GSHCYLNLPP GFRFHPTDEE LVVHYLKKKV TSSPLPVSII AEVDLYKYDP 60 WELPGKTTFG EHEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVMT AGGTQKVGVK 120 KALVFYGGKP PRGVKTNWIM HEYRLVDKKL TSDRPIGFDL ASKKNSLRLD DWVLCRIYKK 180 SNTNKGLMDR DDKPDFSSAV MDEMMLASSV NNVVGLNSNK FYLADNLSSS TFNKQALYEP 240 GLMNTASNLS AVVSLHSHHA QLQGPSQTAS LLLHQLSHHH HHHAGDDEFR QPPYPLPASS 300 SLNWYPT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-74	16	182	13	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013464756.1	1e-112	NAC transcription factor 56
Swissprot	Q9LD44	5e-94	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A072VB10	1e-110	A0A072VB10_MEDTR; NAC transcription factor-like protein
STRING	Lus10032657	1e-111	(Linum usitatissimum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	6e-96	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Kaladp0008s0854.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]