PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0813.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 904aa    MW: 99586.2 Da    PI: 6.8153
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0813.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24130231199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Kaladp0008s0813.1.p 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFI- 217
                          99*****************************86666675.9************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Kaladp0008s0813.1.p 218 -WNDKNQLLLGIRRA 231
                          .7888889***9997 PP
2Auxin_resp114.78.3e-38256338183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sd+dp +WpnS+Wrs+k
  Kaladp0008s0813.1.p 256 AAHAAATNSRFSIFFNPRASPSEFVIPLAKYVKAVYqTRVSVGMRFRMLFETEESSVRRYMGTITGISDMDP-KWPNSHWRSVK 338
                          79********************************99799*********************************.********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.94E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41121245IPR015300DNA-binding pseudobarrel domain
CDDcd100179.34E-22129230No hitNo description
SMARTSM010191.4E-23130232IPR003340B3 DNA binding domain
PfamPF023627.1E-22130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196130232IPR003340B3 DNA binding domain
PfamPF065071.2E-31256338IPR010525Auxin response factor
PfamPF023097.8E-7769857IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-7772848No hitNo description
PROSITE profilePS5174524.937772856IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MRQSGATGFS PQHAVQEGEK RTLNSELWHA CAGPLVSLPT VGSRVVYFPQ GHSEQVVATT  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQDQ KDPYLPAELG  120
SPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPCQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLIA GDSVLFIWND KNQLLLGIRR ATRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFSIFF NPRASPSEFV IPLAKYVKAV YQTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDMDPKWP NSHWRSVKVG WDESTAGDRQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP SGLPSLPGVK DDELGLNSPM MWLRGDGGLP MNYPAMGAGP  420
WMAPRLDASM LGLQTDMYQA MAAAALQEMR AVDPSKQMIP SSLVQIQQPQ SVANRSAHRI  480
SPHMLQQSQT LLPFSQCTQE YQYQGQSQSQ SHPHQQTQFL QHQIQQQTSF SNPPLQQQEQ  540
QQPPQQKNPN SVSASPRYVS SLSTSQSMTG QGMSNPSHSH AYTGLNRNSA DVTGGMISPL  600
HSLLGSCSQD ELPHLLNPPR TNQMVSASDW PAKRIAMDHE SLASATSQCI TTQVVQQRLG  660
HPPVNISPHS VSLPPFPGRE CTNDQEGNTD QQNHLLFGAN IEPSSLILQH GMLNLMGVGG  720
LNDSTTMPFV SSTFMRNSGP DFTLNRAMTP SNCIDESGYL QSAGNVGNLA SDTFVKVHKF  780
GSFGRSLDIT KFSSYQELRS ELARMFGLEG QLEDPVRSGW QLVFVDREND VLLLGDDPWP  840
EFVSSVSCIK ILSPQEVQQM GKEGIALLNS APGQRISSIN CEDYTESGNK GGSGIASAGS  900
LDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1571635943388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021595218.10.0auxin response factor 6-like isoform X1
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2C9UGD00.0A0A2C9UGD0_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]