PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0688.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 665aa MW: 74169.5 Da PI: 5.0265

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0688.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.9	4.2e-49	74	199	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +G rF+P+deel++++L++k++gk+ ++ +vi+e+d++k+ePwdLp + +++++kew+fF+++d+k++ g+r nrat++gyWkatgkd+ Kaladp0008s0688.1.p 74 VGWRFSPKDEELINYFLRRKINGKEEDV-RVIREIDVCKWEPWDLPsQsVLQSDDKEWFFFCPQDRKSPGGSRLNRATRKGYWKATGKDR 162 79*********************999.99**********96347778999****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ s k++++g+kktLvf++grap++++t Wvmheyr+ Kaladp0008s0688.1.p 163 KIRS-KKNEIGMKKTLVFHTGRAPNSKRTYWVMHEYRA 199 .8899*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-54	69	222	IPR003441	NAC domain
PROSITE profile	PS51005	50.996	72	222	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	74	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MSDRNPSLTP SAFPDPKFRP SLTPQTLFYS NPVRRSTFLS PHLVPPSSAG FSTLCCVRFG 60 GFLGEAMTLN ASQVGWRFSP KDEELINYFL RRKINGKEED VRVIREIDVC KWEPWDLPSQ 120 SVLQSDDKEW FFFCPQDRKS PGGSRLNRAT RKGYWKATGK DRKIRSKKNE IGMKKTLVFH 180 TGRAPNSKRT YWVMHEYRAT LKDLDGTHPG QKPFVLCRLF KRDDESVLDA ADNEVELASL 240 SPAPNEHSPM DLKPELVSNQ EGPVAAREGE EKVASAENFE DLSLQTPSQD IFYDTECHIQ 300 NNPADAEDLE NTVKPTPKEV KQDANLDYLE IFADPDPRAL SLLDSPVVES MGSSLLDHLA 360 ASNQYGNENL PLSFDQVEYD DSYDALQYIT VSHQSPEDPV NNRISTDDYG TSELEHLNLF 420 GALGVVRGSF WKQNSEETEV GQIWSELEQL ASSAESNDHS PAFSSTWTSF QQADNLPTRP 480 EYQGAAFPGG SVLEHCVFQD KDPISHSYLS NSKIEIRARP PPQVEPGVSS FDKHGTARRR 540 IRLQTNLRKR SSYPYELQQL ASESAGDESD RTPMGTMVLQ SGNENEGTPI QTVIPQSGRF 600 RQTSAESDEE VIGKLEAART STTPRFSTFK LSSLAAPYKL LVGLASVAAM LAAYAGIRGY 660 LRGS*

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MSDRNPSLTP SAFPDPKFRP SLTPQTLFYS NPVRRSTFLS PHLVPPSSAG FSTLCCVRFG  60
GFLGEAMTLN ASQVGWRFSP KDEELINYFL RRKINGKEED VRVIREIDVC KWEPWDLPSQ  120
SVLQSDDKEW FFFCPQDRKS PGGSRLNRAT RKGYWKATGK DRKIRSKKNE IGMKKTLVFH  180
TGRAPNSKRT YWVMHEYRAT LKDLDGTHPG QKPFVLCRLF KRDDESVLDA ADNEVELASL  240
SPAPNEHSPM DLKPELVSNQ EGPVAAREGE EKVASAENFE DLSLQTPSQD IFYDTECHIQ  300
NNPADAEDLE NTVKPTPKEV KQDANLDYLE IFADPDPRAL SLLDSPVVES MGSSLLDHLA  360
ASNQYGNENL PLSFDQVEYD DSYDALQYIT VSHQSPEDPV NNRISTDDYG TSELEHLNLF  420
GALGVVRGSF WKQNSEETEV GQIWSELEQL ASSAESNDHS PAFSSTWTSF QQADNLPTRP  480
EYQGAAFPGG SVLEHCVFQD KDPISHSYLS NSKIEIRARP PPQVEPGVSS FDKHGTARRR  540
IRLQTNLRKR SSYPYELQQL ASESAGDESD RTPMGTMVLQ SGNENEGTPI QTVIPQSGRF  600
RQTSAESDEE VIGKLEAART STTPRFSTFK LSSLAAPYKL LVGLASVAAM LAAYAGIRGY  660
LRGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-37	75	222	20	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-37	75	222	20	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-37	75	222	20	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-37	75	222	20	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-37	75	222	23	168	NAC domain-containing protein 19
3swm_B	2e-37	75	222	23	168	NAC domain-containing protein 19
3swm_C	2e-37	75	222	23	168	NAC domain-containing protein 19
3swm_D	2e-37	75	222	23	168	NAC domain-containing protein 19
3swp_A	2e-37	75	222	23	168	NAC domain-containing protein 19
3swp_B	2e-37	75	222	23	168	NAC domain-containing protein 19
3swp_C	2e-37	75	222	23	168	NAC domain-containing protein 19
3swp_D	2e-37	75	222	23	168	NAC domain-containing protein 19
4dul_A	2e-37	75	222	20	165	NAC domain-containing protein 19
4dul_B	2e-37	75	222	20	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	4e-78	NAC transcription factor-like 9

Link Out ? help Back to Top
Phytozome	Kaladp0008s0688.1.p