PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0008s0603.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CPP | ||||||||
Protein Properties | Length: 505aa MW: 55005 Da PI: 8.2836 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.5 | 1.5e-14 | 25 | 64 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+skClk+YCeCfa+g++C++ C+C +C+N+ e+ Kaladp0008s0603.3.p 25 RQKQCNCKHSKCLKLYCECFASGTYCEN-CNCVNCHNNMEH 64 689************************9.********9875 PP | |||||||
2 | TCR | 49.4 | 9.1e-16 | 109 | 148 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++k+C+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Kaladp0008s0603.3.p 109 KHNKSCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 148 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.8E-17 | 24 | 64 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.781 | 25 | 149 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.0E-11 | 26 | 61 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-18 | 109 | 150 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-12 | 112 | 147 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MTTTFLLIRK PESPKTKTKD GTPKRQKQCN CKHSKCLKLY CECFASGTYC ENCNCVNCHN 60 NMEHEVSRRE AVEATLERNP NAFRPKIAGS PQVNRAAKEA TGDLLLLAKH NKSCHCKKSG 120 CLKKYCECFQ ANILCSENCK CIDCKNFEGS EERKALHGDQ ATNMAYIQQA ANAAITGAVG 180 LSGFISPPLS KRRKGPDIFF GSSSNDLSKI AHIHPVNTGK SPAPSNSSST SVARSVNPPV 240 SSLSKFTYRS LLADIIQPHD LKELCSNLVV MSREVVQTYS EQENSSAHEA TEHKILIATP 300 NQNRTRTHNE AAAENAIIND PDCSCPDNVD MPDRPLSPGT LALMCDEQDT LFMSNSTPNR 360 LTSQGGNSGS QFHNVDEMTE VHAEQEKVVL TKFRDTLNRL IYFGEIKERK CLSLARGEAG 420 MKDAFSNSSI NGRYATTNQP IPIPTSNSKN AYSVAATRID TSAASTTTTT SAAATIVSNS 480 IGQQLHIPSV GRTGNIKPKI EQHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-31 | 26 | 156 | 11 | 130 | Protein lin-54 homolog |
5fd3_B | 3e-31 | 26 | 156 | 11 | 130 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451190.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
Refseq | XP_006475649.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Refseq | XP_024952904.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-154 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A067DUG9 | 0.0 | A0A067DUG9_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UJK8 | 0.0 | V4UJK8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475649.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451190.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-138 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0008s0603.3.p |