PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0008s0419.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 357aa    MW: 40749.9 Da    PI: 9.9398
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0008s0419.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09257304448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          W+  E  +l+++v+++G g+W+ I r +    ++Rt  ++k++w+++l
  Kaladp0008s0419.1.p 257 WSDYEITILIEGVAKYGVGRWTDIKRGLFpptTRRTSVDLKDKWRNLL 304
                          9*************************99889***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.962248308IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-12250305IPR009057Homeodomain-like
SuperFamilySSF466891.42E-14251311IPR009057Homeodomain-like
SMARTSM007178.7E-9253306IPR001005SANT/Myb domain
CDDcd116606.48E-19255305No hitNo description
PfamPF002497.0E-7257304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVDKSMNTCR NPATESVRGW HSSAIRSHNK TKPEVVSHGN GHLICDSVVT FSSIVNNGSP  60
HHRDNDAFFT EKRSRKWYID EYSKYHSVHT NKRTGSLSKN SKKKSTCLKS RYQDCINRNV  120
REKKTLRYSE YMTEAIQVPF GPLVLKECSR KKAFVPSVRF QRNGTDFNID ITSVRDKEYT  180
EATFLHPSPD VIFERNLQFM FAGPCDPEDH SKAIAKISEV NTNTELSLAP SQDERSDDND  240
LGEVTSDKSG RKHNRYWSDY EITILIEGVA KYGVGRWTDI KRGLFPPTTR RTSVDLKDKW  300
RNLLKACTAQ LHSKNEGRRV AHQQVPQAVL QQVKELAAIH PYPKNHSPKN ALVVRC*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-24TRF-like 6